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lskatz / mashtree

:deciduous_tree: Create a tree using Mash distances
GNU General Public License v3.0
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Allow use of premade sketches in conjunction with --file-of-files #52

Closed bede closed 3 years ago

bede commented 4 years ago

Mashtree v1.1.2 appears to assume that a supplied FOFN contains fastqs, and unlike the command line args, is not accepting of .msh sketches. It would be useful to be able to supply sketches inside a FOFN when dealing with large datasets approaching ARG_MAX when input with shell globbing.

CBorreda commented 4 years ago

Hi Bede,

I was interested in using a file of files with .msh files and it worked fine for mashtree 1.1.2. I recently installed it using the cpanm method described in INSTALL.md

I'm just a user but wanted to share with you that it is working for me.

Best

bede commented 4 years ago

Thanks @CBorreda : )