I have been getting three different errors in my .err file for several .msh files, and I'm not really sure what they mean or how to fix them. Here is an example:
mashtree: mashDistance: Databasing distances (1/47, TID48)
mashtree: main::mashDistance: Can't locate object method "addDistancesFromHash" via package "Mashtree::Db"
Stopped at /mnt/virtual_environments/updated_mashtree/bin/mashtree line 391.
Thread 89 terminated abnormally: mashtree: main::mashDist: ERROR with 'mash dist -t /tmp/MASHTREE.ob8OeD/GCA_004482585.1_PDT000062706.2_genomic.fna.msh -l /tmp/MASHTREE.ob8OeD/mshList.txt'
Stopped at /mnt/virtual_environments/updated_mashtree/bin/mashtree line 421.
Perl exited with active threads:
24 running and unjoined
22 finished and unjoined
0 running and detached
ERROR: could not open "/tmp/MASHTREE.ob8OeD/GCA_010061675.1_PDT000658520.1_genomic.fna.msh" for reading.
Hello,
I have been getting three different errors in my .err file for several .msh files, and I'm not really sure what they mean or how to fix them. Here is an example:
mashtree: mashDistance: Databasing distances (1/47, TID48) mashtree: main::mashDistance: Can't locate object method "addDistancesFromHash" via package "Mashtree::Db" Stopped at /mnt/virtual_environments/updated_mashtree/bin/mashtree line 391.
Thread 89 terminated abnormally: mashtree: main::mashDist: ERROR with 'mash dist -t /tmp/MASHTREE.ob8OeD/GCA_004482585.1_PDT000062706.2_genomic.fna.msh -l /tmp/MASHTREE.ob8OeD/mshList.txt' Stopped at /mnt/virtual_environments/updated_mashtree/bin/mashtree line 421. Perl exited with active threads: 24 running and unjoined 22 finished and unjoined 0 running and detached
ERROR: could not open "/tmp/MASHTREE.ob8OeD/GCA_010061675.1_PDT000658520.1_genomic.fna.msh" for reading.
Any input is appreciated, thanks!