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lskatz
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mlst-hash-template
This is a template for any new hash-based MLST database
GNU General Public License v3.0
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LIN codes
#35
lskatz
opened
1 year ago
1
Describe loci in a scheme
#34
lskatz
opened
1 year ago
0
Add requirements for new callers
#33
lskatz
opened
1 year ago
0
respec CIGAR field
#32
lskatz
opened
1 year ago
0
Lskatz specification 2
#31
lskatz
closed
1 year ago
0
Lskatz specification 1
#30
lskatz
closed
1 year ago
0
Need to bring in profiles
#29
lskatz
closed
1 year ago
2
Define hash algorithms
#28
lskatz
closed
1 year ago
1
Consider locality sensitive hashes
#27
lskatz
closed
1 year ago
7
Benchmarking the scheme template
#26
lskatz
closed
1 year ago
0
Add in hashing of translated sequences
#25
lskatz
opened
1 year ago
0
added a 'plaintext' hashing algorithm
#24
lskatz
closed
1 year ago
0
actual allele database compression
#23
lskatz
closed
1 year ago
5
Protein hashing
#22
lskatz
opened
1 year ago
0
Have scheme name in header
#21
lskatz
opened
1 year ago
0
QC checks
#20
lskatz
opened
1 year ago
0
Assembler options?
#19
lskatz
closed
1 year ago
4
Have a new field that describes subsets
#18
lskatz
opened
2 years ago
0
Tie this scheme into an MLST caller
#17
lskatz
opened
2 years ago
0
Testing for collisions with sane mutations
#16
lskatz
closed
2 years ago
6
specification: add defined attributes field
#15
lskatz
closed
2 years ago
2
Benchmark hashsum types
#14
lskatz
opened
2 years ago
1
Testing for even more collisions
#13
lskatz
closed
2 years ago
10
Have a test case
#12
lskatz
opened
2 years ago
1
Testing for collisions
#11
lskatz
closed
2 years ago
9
RUST: remove trailing equals from base64 encoded.
#10
telatin
closed
2 years ago
0
Start/stop codon
#9
lskatz
closed
2 years ago
2
Nim tests and benchmark
#8
telatin
closed
2 years ago
0
Unit testing for rust
#7
lskatz
opened
2 years ago
0
Unit testing for nim
#6
lskatz
closed
2 years ago
0
move perl and python things
#5
lskatz
opened
2 years ago
0
Dev
#4
lskatz
closed
2 years ago
0
Nim implementation
#3
telatin
closed
2 years ago
1
Python
#2
lskatz
closed
2 years ago
0
Some more scripts
#1
telatin
closed
2 years ago
0