Closed VeraWulol closed 7 years ago
jdswinbank
commented
7 years ago Thanks for the report!
Can you provide a bit more information about how you've reached this point? How have you installed the rest of the LSST stack? Did you just type scons, or did you provide it with any other arguments?
VeraWulol
commented
7 years ago Dear Mr Swinbank, The error.txt contains the error message as I typed "scons" only. I did not provide any argument nor option to it. The list.txt contains the output of "eups list". We have installed the LSST stack with lsstsw and lsst-build. The LSST installation should work fine as it has been running for all other commands for some time.
Thank you, VeraWu
Error.txt:
scons: Reading SConscript files ...
EUPS integration: enabled
Checking who built the CC compiler...(cached) gcc=4.8.2
CC is gcc version 4.8.2
Checking for C++11 support
Checking whether the C++ compiler works... (cached) yes
C++11 supported with '-std=c++11'
Setting up environment to build package 'meas_mosaic'.
Could not find EUPS product dir for 'meas_mosaic'; using /home/verawu/my_packages/meas_mosaic.
scons: done reading SConscript files.
scons: Building targets ...
scons: `lib' is up to date.
scons: `python' is up to date.
running tests/testCameraGeomShim.py... failed
scons: `shebang' is up to date.
Failed test output:
tests/testCameraGeomShim.py
Traceback (most recent call last):
File "tests/testCameraGeomShim.py", line 26, in <module>
import lsst.meas.mosaic as measMosaic
ImportError: No module named mosaic
The following tests failed:
/home/verawu/my_packages/meas_mosaic/tests/.tests/testCameraGeomShim.py.failed
1 tests failed
scons: *** [checkTestStatus] Error 1
scons: building terminated because of errors.list.txt
activemqcpp 3.9.0.lsst2+3 b2896 b2895
afw 12.1+6 b2896
afw 13.0-28-g978e321+1 current b2894 setup
afwdata 12.1+1 b2896 b2895
afwdata 13.0-1-g1546c47+2 current b2894 setup
apr 1.5.2 current b2896 b2894 b2895 setup
apr_util 1.5.4 current b2896 b2894 b2895 setup
astrometry_net 0.67.123ff3e.lsst1+1 current b2896 b2894 b2895 setup
astrometry_net_data 10.0+86 b2896 b2895
astrometry_net_data 10.0+92 current b2894
astrometry_net_data ps1_pv3_3pi_20170110-and
astrometry_net_data tag:verawu verawu setup
astropy 0.0.1.lsst2+2 current b2896 b2894 b2895 setup
astshim master-gb637561bb9 current b2894 setup
base 12.1+2 b2896 b2895
base 13.0-4-g0bde1de current b2894 setup
boost 1.60.lsst1+1 current b2896 b2894 b2895 setup
cat 12.1+19 b2896
cfitsio 3360.lsst4 current b2896 b2894 b2895 setup
ci_hsc LOCAL:/home/verawu/ci_hsc setup
coadd_chisquared 12.1+5 b2896
coadd_chisquared 13.0-2-ga4f5e85+2 current b2894 setup
coadd_utils 12.1+5 b2896
coadd_utils 13.0-2-gf5c5ced+2 current b2894 setup
ctrl_events 12.1+23 b2896 b2895
ctrl_execute 12.1+37 b2896
ctrl_orca 12.1+3 b2896
ctrl_platform_gordon 12.1+3 b2896
ctrl_platform_lsst 12.1+3 b2896
ctrl_pool 12.1+11 b2896
ctrl_pool 13.0-2-gb1fa231+3 current b2894 setup
ctrl_provenance 12.1+39 b2896
daf_base 12.1+8 b2896 b2895
daf_base 13.0-1-g174df6e+3 current b2894 setup
daf_butlerUtils 12.1+10 b2896
daf_persistence 12.1+10 b2896
daf_persistence 13.0-6-gf146911 current b2894 setup
datarel 12.1+12 b2896
db 12.1+13 b2896 b2895
display_ds9 12.1+10 b2896
display_ds9 13.0-2-g6174d4c+2 current b2894
doxygen 1.8.5.lsst1 current b2896 b2894 b2895 setup
eigen 3.2.5.lsst2 current b2896 b2894 b2895 setup
esutil 0.6.0+1 current b2896 b2894 b2895 setup
fftw 3.3.4.lsst2 current b2896 b2894 b2895 setup
galsim 1.4.3 current b2896 b2894 b2895 setup
geom 12.1+25 current b2894 setup
geom 12.1+26 b2896 b2895
gsl 1.16.lsst3 current b2896 b2894 b2895 setup
healpy 1.8.1.lsst2+5 current b2896 b2894 b2895 setup
ip_diffim 12.1+13 b2896
ip_diffim 13.0-10-gcc6134a+2 current b2894 setup
ip_isr 12.1+9 b2896
ip_isr 13.0-9-g733b75c+2 current b2894 setup
lmfit 0.9.3+4 current b2896 b2894 b2895 setup
log 12.1+3 b2896 b2895
log 13.0-2-g15de9a1+3 current b2894 setup
log4cxx 0.10.0.lsst7 current b2896 b2894 b2895 setup
lsst 12.1+1 b2896 b2895
lsst_apps 12.1+20 b2896
lsst_apps 13.0-2-gcc7d151+2 current b2894
lsst_build LOCAL:/export/rliu/lsstsw/lsst_build setup
lsst_distrib 12.1+74 b2896
mariadb 10.1.21.lsst1 b2896 b2895
mariadbclient 10.1.21.lsst1 current b2896 b2894 b2895 setup
matplotlib 0.0.4 current b2896 b2894 b2895 setup
meas_algorithms 12.1+8 b2896
meas_algorithms 13.0-8-g1664ca9+2 current b2894 setup
meas_astrom 12.1+12 b2896
meas_astrom 13.0-4-g2013b0d+2 current b2894 setup
meas_base 12.1+8 b2896
meas_base 13.0-9-gd0b67f9+2 current b2894 setup
meas_deblender 12.1+6 b2896
meas_deblender 13.0-5-g6708b9e+5 current b2894 setup
meas_extensions_photometryKron 12.1+10 b2896
meas_extensions_photometryKron 13.0-4-ge460333+2 current b2894 setup
meas_extensions_psfex 12.1+9 b2896
meas_extensions_psfex 13.0-3-gbddb874+2 current b2894 setup
meas_extensions_shapeHSM 12.1+6 b2896
meas_extensions_shapeHSM 13.0-6-g11b35ca+2 current b2894 setup
meas_extensions_simpleShape 12.1+11 b2896
meas_extensions_simpleShape 13.0-5-gaa0a428+2 current b2894 setup
meas_modelfit 12.1+5 b2896
meas_modelfit 13.0-7-g0effe82+3 current b2894 setup
minuit2 5.34.14 current b2896 b2894 b2895 setup
mpi 0.0.1+2 current b2896 b2894 b2895 setup
mpi4py 2.0.0+2 current b2896 b2894 b2895 setup
mpich 3.2.lsst1 current b2896 b2894 b2895 setup
mysqlpython 1.2.3.lsst2+11 b2896 b2895
ndarray 1.2.0.lsst1+1 b2896 b2895
ndarray 1.3.0-1-g4a984de+1 current b2894 setup
numpy 0.0.3+1 current b2896 b2894 b2895 setup
obs_base 13.0-13-gdd29b46+1 current b2894 setup
obs_cfht 12.1+4 b2896
obs_cfht 13.0-6-g04cb674+2 current b2894 setup
obs_decam 12.1+4 b2896
obs_decam 13.0-9-gc3084d4+1 current b2894 setup
obs_file tag:current current
obs_lsstSim 12.1+5 b2896
obs_lsstSim 13.0-5-g109809a+2 current b2894
obs_sdss 12.1+5 b2896
obs_sdss 13.0-4-g6df16d3+4 current b2894
obs_subaru 12.1+4 b2896
obs_subaru 13.0-21-g3792e7d+1 current b2894 setup
obs_test 12.1+10 b2896
obs_test 13.0-6-g7b63e3f+2 current b2894 setup
pex_config 12.1+9 b2896 b2895
pex_config 13.0-1-g41367f3+3 current b2894 setup
pex_exceptions 12.1+11 b2896 b2895
pex_exceptions 13.0-1-g52a7baa+3 current b2894 setup
pex_logging 12.1+17 b2896 b2895
pex_policy 12.1+17 b2896 b2895
pex_policy 13.0-1-g47a359c+3 current b2894 setup
pipe_base 12.1+8 b2896
pipe_base 13.0-3-g7fa07e0 current b2894 setup
pipe_drivers 12.1+7 b2896
pipe_drivers 13.0-3-gfcfef02+7 current b2894
pipe_drivers tag:verawu verawu setup
pipe_tasks 12.1+9 b2896
pipe_tasks 13.0-20-gd86ed56+1 current b2894 setup
psfex 12.0+14 current b2894 setup
psfex 12.1+1 b2896 b2895
pybind11 master-g715ff27535 current b2894 setup
pyfits 3.4.0+7 current b2896 b2894 b2895 setup
pykg_config 1.3.0+1 current b2896 b2894 b2895 setup
python 0.0.6 current b2896 b2894 b2895 setup
python_d2to1 0.2.12.lsst2+1 current b2896 b2894 b2895 setup
python_future 0.16.0 current b2896 b2894 b2895 setup
python_mysqlclient 1.3.7.lsst1+8 current b2896 b2894 b2895
python_psutil 4.1.0+3 current b2896 b2894 b2895 setup
pyyaml 3.11.lsst1+3 current b2896 b2894 b2895 setup
scipy 0.0.1.lsst1+3 current b2896 b2894 b2895 setup
scisql 0.3.5-1-g0c09214+1 b2896 b2895
scons 2.5.0.lsst2+1 current b2896 b2894 b2895 setup
sconsUtils 12.1+1 b2896 b2895
sconsUtils 13.0-3-ga4b1818 current b2894 setup
shapelet 12.1+8 b2896
shapelet 13.0-3-g20b541e+2 current b2894 setup
skymap 12.1+6 b2896
skymap 13.0-2-gf9e84ea+2 current b2894 setup
skypix 12.1+56 b2896
skypix 13.0+26 current b2894 setup
sqlalchemy 1.0.8.lsst3+3 b2896 b2895
starlink_ast lsst-dev-gc4be228eb6 current b2894 setup
stsci_distutils 0.3.7.lsst1+2 current b2896 b2894 b2895 setup
swig 3.0.10 current b2896 b2894 b2895 setup
testdata_cfht 12.1 b2896 b2895
testdata_cfht 13.0-1-g2bee09e current b2894 setup
testdata_decam 12.1 b2896 b2895
testdata_decam 13.0-2-gdd95a3b current b2894 setup
testdata_subaru 12.1 b2896 b2895
testdata_subaru 13.0-1-gf61fcd2 current b2894 setup
tmv 0.73+5 current b2896 b2894 b2895 setup
utils 12.1+6 b2896 b2895
utils 13.0-1-g976b40b+3 current b2894 setup
validate_base master-g4f5ff6b7a1 current b2894 setup
validate_drp master-g42ee9d6260+1 current b2894 setup
validation_data_cfht master-g023f152e8a+4 current b2894 setup
validation_data_decam master-g52ac2b0d78 current b2894 setup
wcslib 5.13.lsst1 current b2896 b2894 b2895 setup
xpa 2.1.15.lsst3 current b2896 b2894 b2895should I do setup -j -r . before scons?
I tried, it seems no error is coming out now, though Im not sure if its the way to deal with it. It seems to be skipping the testCameraGeomShim.py
jdswinbank
commented
7 years ago Hello,
should I do
setup -j -r .beforescons?
You will certainly need to set up meas_mosaic before you can successfully build and test it. If you have the rest of the stack set up, and are building meas_mosaic separately, that command should do the trick.
I tried, it seems no error is coming out now, though Im not sure if its the way to deal with it. It seems to be skipping the testCameraGeomShim.py
However, the test should not be skipped — are you sure that's happening? It might be worth starting from a fresh copy of meas_mosaic (git clean -dfx can help you with this, but be aware it will delete all non-LSST-provided files in the meas_mosaic directory), making sure that meas_mosaic is set up before you start.
On the other hand, I gather from your recent postings on community.lsst.org that meas_mosaic is running for you, so I suspect there's not really an issue here. If you have managed to build and test it, please close this ticket.
As I scons, the error is reported as:
which, as I checked, mosaic do exist inside the lsst/meas