ltscomputingllc / faersdbstats

Generate safety signal statistics from FDA FAERS data
Apache License 2.0
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issue with sed in bash script #7

Open elpidakon opened 5 years ago

elpidakon commented 5 years ago

In create_legacy_all_demo_data_files_with_filename_column.sh, the original string in sed (line 59) doesn't exist in all_version_B_demo_legacy_data_with_filename.txt (based on the most updated version of DEMO12Q1.txt).

I think the line should be replaced the following:

sed -i 's/8129732$8401177$I$$8129732-9$20120126$20120206$20120210$EXP$JP-CUBIST-$E2B0000000182$CUBIST PHARMACEUTICALS, INC.$85$YR$M$Y$$$20120210$$$$$JAPAN$DEMO12Q1.TXT/8129732$8401177$I$$8129732-9$20120126$20120206$20120210$EXP$JP-CUBIST-E2B0000000182$CUBIST PHARMACEUTICALS, INC.$85$YR$M$Y$$$20120210$$$$$JAPAN$DEMO12Q1.TXT/' all_version_B_demo_legacy_data_with_filename.txt