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lucapinello / CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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Trailing whitespace in the amplicon sequence is not tolerated #17

Open martinaryee opened 7 years ago

martinaryee commented 7 years ago

Feature request: Trim trailing whitespace in amplicon field (Column 2) of amplicon file.

Background: I sometimes get the following error when running CRISPRessoPooled in amplicon mode:

ERROR: The amplicon sequence 4-11873390-11873412 contains wrong characters:

It is related to trailing whitespace in the amplicon field of the amplicon file which seems to happen frequently in when Excel is involved in generating these files.