Closed amarcog closed 5 years ago
Yes there is a flag for the command line you can set to have larger alleles. BTW we have a new version of crispresso i.e. Crispresso2. This version is now depracated and not supported anymore.
On Fri, 17 May 2019, 6:59 am amarcog, notifications@github.com wrote:
Hello Luca,
Is there any way to have longer allele sequences in the file Alleles_frequency_table_around_cut_sitefor*.txt?
It would be useful for the analysis of HDR events that are located far away from the gRNA cutting site.
Thank you for your attention,
Andrés
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Thank you for your answer.
I don't find this flag, is it only available in CRISPResso2? Maybe is --window_around_sgrna? I'm using this version because we want to be consistant with a big amount of old data that was already analyzed with CRISPResso1. But for sure in next experiments I will use the new version.
Than you again for your attention
Andrés
Andres,
This is the option:
--offset_around_cut_to_plot 'Offset to use to summarize alleles around the cut site in the alleles table plot.' default=20
Best,
Luca
Thank you!
Andrés
De: Luca Pinello notifications@github.com Responder a: lucapinello/CRISPResso reply@reply.github.com Fecha: viernes, 17 de mayo de 2019, 15:47 Para: lucapinello/CRISPResso CRISPResso@noreply.github.com CC: amarcog andresmg1993@gmail.com, Author author@noreply.github.com Asunto: Re: [lucapinello/CRISPResso] Longer Allele Sequences (#53)
Andres,
This is the option:
--offset_around_cut_to_plot 'Offset to use to summarize alleles around the cut site in the alleles table plot.' default=20
Best,
Luca
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Hello Luca,
Is there any way to have longer allele sequences in the file Alleles_frequency_table_around_cut_sitefor*.txt?
It would be useful for the analysis of HDR events that are located far away from the gRNA cutting site.
Thank you for your attention,
Andrés