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lucasnell / jackalope

A swift, versatile phylogenomic and high-throughput sequencing simulator
https://jackalope.lucasnell.com
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Install problem #10

Closed snacktavish closed 5 years ago

snacktavish commented 5 years ago

Hi, I am trying to install jackalope using 

devtools::install_github("lucasnell/jackalope")

but I am getting this error. Any pointers?

** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
ERROR: absolute paths in ‘libs/Rhtslib.so’ include the temporary installation directory: please report to the package maintainer and use ‘--no-staged-install’

R version info is: platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 6.0
year 2019
month 04
day 26
svn rev 76424
language R
version.string R version 3.6.0 (2019-04-26) nickname Planting of a Tree

lucasnell commented 5 years ago

You may need to update your version of Rhtslib using BiocManager::install("Rhtslib"). If that doesn't work, can you post the output of packageVersion("Rhtslib"), .libPaths(), and Rhtslib::pkgconfig?

snacktavish commented 5 years ago

Updating BiocManager and Rhtslib did it! Thanks.