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lucasnell / jackalope

A swift, versatile phylogenomic and high-throughput sequencing simulator
https://jackalope.lucasnell.com
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Tree sampler #9

Closed lucasnell closed 5 years ago

lucasnell commented 5 years ago

Using binary search tree improves speed of sampling mutation locations

codecov-io commented 5 years ago

Codecov Report

Merging #9 into master will increase coverage by 1.03%. The diff coverage is 88.8%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master       #9      +/-   ##
==========================================
+ Coverage   81.85%   82.88%   +1.03%     
==========================================
  Files          42       43       +1     
  Lines        5152     5836     +684     
==========================================
+ Hits         4217     4837     +620     
- Misses        935      999      +64
Impacted Files Coverage Δ
src/hts_pacbio.h 84.24% <100%> (-1.55%) :arrow_down:
src/hts_illumina.h 94.44% <100%> (+5.04%) :arrow_up:
src/io_vcf.h 96.93% <100%> (+1.2%) :arrow_up:
src/phylogenomics.h 82.87% <100%> (ø)
src/mutator_location.h 100% <100%> (ø)
src/alter_reference.cpp 93.15% <100%> (-2.31%) :arrow_down:
src/create_sequences.cpp 100% <100%> (ø) :arrow_up:
src/io_ms.cpp 81.56% <100%> (-2.7%) :arrow_down:
src/seq_classes_var.h 94.05% <100%> (-3.67%) :arrow_down:
src/io_fasta.cpp 80.28% <100%> (-2.84%) :arrow_down:
... and 59 more

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