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lucidrains
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alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
MIT License
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OSError: out of pty devices
#311
miaohao0309
opened
1 week ago
0
Fix pAE-related bugs
#310
qiaoqiaoLF
closed
1 week ago
1
about the distillation data mentioned in alphafold3
#309
yh-pengtu
opened
1 week ago
0
is there pretrained models for alphafold3?
#308
nibingwei123
opened
1 week ago
2
Questions about the chain/interface clustering files
#307
zqcai19
opened
2 weeks ago
3
Change placeholder `expansion_factor` value
#306
amorehead
closed
3 weeks ago
0
Remove an extra residual connection in `DiffusionTransformer`
#305
amorehead
closed
3 weeks ago
2
Remove zero init and constant biasing for `to_gate`
#304
amorehead
closed
3 weeks ago
0
Remove zero initialization for `adaln_zero_gamma_linear`
#303
amorehead
closed
3 weeks ago
1
Remove zero initialization of `to_attn_bias` weights, since for these `bias=False`
#302
amorehead
closed
3 weeks ago
0
Set `bias=False` for both `LayerNorms` in `AdaptiveLayerNorm`
#301
amorehead
closed
3 weeks ago
3
Expand model selection score weights
#300
amorehead
closed
3 weeks ago
0
Handle a distillation training edge case
#299
amorehead
closed
3 weeks ago
0
Restrict numeric workarounds to ROCm GPUs
#298
amorehead
closed
4 weeks ago
5
rewriting logic for computing rsa for model selection
#297
lucidrains
closed
4 weeks ago
3
Atom at the origin cause incorrect res_atom_elements results
#296
wanggaa
opened
1 month ago
1
some more nim prep
#295
lucidrains
closed
1 month ago
0
Add support for suffix `.gz` gzipped `cif` and `a3m` inputs for training
#294
gbouras13
closed
1 month ago
1
Fix two `verbose` route oversights
#293
amorehead
closed
1 month ago
0
also allow for customizing atom bonds
#292
lucidrains
closed
1 month ago
0
add distributed evaluation for fabric training, make sure it can be t…
#291
lucidrains
closed
1 month ago
0
maybe fix
#290
lucidrains
closed
1 month ago
0
Add missing variable
#289
amorehead
closed
1 month ago
2
Cache some variables during MSA featurization
#288
amorehead
closed
1 month ago
0
Fix typechecking annotation
#287
amorehead
closed
1 month ago
0
first go for a simple cache for atompair ids for residues and nucleot…
#286
lucidrains
closed
1 month ago
0
Fix name of variable
#285
amorehead
closed
1 month ago
0
Missing Unresolved Residues in `mmcif_parsing`
#284
v-shaoningli
opened
1 month ago
1
Fix `Alphafold3` module argument types
#283
amorehead
closed
1 month ago
0
another einx set_at removal
#282
lucidrains
closed
1 month ago
0
add nim
#281
lucidrains
closed
1 month ago
0
Fix variable reference
#280
amorehead
closed
1 month ago
1
A bug : the code 'cropped_biomol, chain_ids_and_lengths, crop_masks = biomol.crop()' in inputs.py does not return the same data type.
#279
MachineLearningHan
opened
1 month ago
1
Ensure pairwise confidence head outputs are masked correctly
#278
amorehead
closed
1 month ago
0
Add missing dependency
#277
amorehead
closed
1 month ago
0
In DB_peptide_cluster, How can we generate DB_{molecule_type}_cluster.tsv
#276
MachineLearningHan
opened
1 month ago
0
Add full MSA pairing support
#275
amorehead
closed
1 month ago
0
Add PDB distillation support
#274
amorehead
closed
1 month ago
0
fix tests
#273
lucidrains
closed
1 month ago
1
Fix ROCm bug triggered by `torch.unique()`
#272
amorehead
closed
1 month ago
0
Address hardware limitations during backprop
#271
amorehead
closed
1 month ago
0
Add NLMs
#270
amorehead
closed
1 month ago
1
Fix PLM test
#269
amorehead
closed
1 month ago
0
Add full constraints set
#268
amorehead
closed
1 month ago
0
Remove Apple .DS_Store file
#267
sbrugman
closed
1 month ago
0
Python 3.9 compatibility
#266
sbrugman
closed
1 month ago
1
Incompatible with python 3.8 on macOS
#265
sbrugman
closed
1 month ago
0
Fix syntax in `alphafold3_input_to_biomolecule()`
#264
amorehead
closed
1 month ago
0
Initial guess
#263
johnny-rodriguez
closed
1 month ago
1
Fix bug in construction of atom indices à la `PDBInput`
#262
amorehead
closed
1 month ago
8
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