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How to adapt to spatial data not from V10 #11

Closed leiLQ closed 10 months ago

leiLQ commented 1 year ago

Hi,

I'm analysing the spatial transcriptomics data from stereo-seq which doesn't have matching H&E image and has different raw data files from Visium.

I have some issues in creating Staffli object with such data. I'm wondering does semla support spatial analysis without H&E image. If so, how could I skip the required image information in creating Staffli object?

Thanks so much!

lfranzen commented 1 year ago

Hello! Apologies for the late reply. Unfortunately semla does not support any other spatial platform than Visium at the moment, which is why it cannot process your stereo-seq data.