filtering normalization etc

[chrkuo]

Hi I did not know that STUtility is now semla and have been trying to explore the tool but is there a preprocessing normalization scaling/filtering step?

[lfranzen]

Hello @chrkuo! You can apply any of the preprocessing functionalities provided through Seurat, such as normalization and scaling, in the same way as it could be achieved in STUtility. In our "Subset and merge" tutorial on the semla website you can moreover find help on how to use the SubsetSTData() function for filtering your data: https://ludvigla.github.io/semla/articles/subset_and_merge.html

Hope that answers you questions! /Lovisa

[lfranzen]

Closing the issue as no further response has been risen