Working towards update 1.1.7 (still a few more things to do though).
Added:
Compatibility with parquet file format, used in Visium HD(?), when loading coordinate files using the LoadSpatialCoordinates function (used in ReadVisiumData).
Optional alternative to compute p-values when calculating spatial autocorrelation scores using CorSpatialFeatures. The p-values are computed using the Student t Distribution, and adjusted p-values are calculated using the Benjamini & Hochberg (BH, or FDR) method.
Bug fixes:
Dealt with an issue in MapFeatures and MapLabels if the specified column contains NA values and when using SeuratObject v.5.
When running RegionNeighbors and specifying a column with labels that contains blankspaces, each blank space will be replaced with punctuation marks in the newly formed column names. A warning message will be displayed in these cases.
Other:
Some other minor things, like fixing typos and updating tests.
Working towards update 1.1.7 (still a few more things to do though).
Added:
LoadSpatialCoordinatesfunction (used inReadVisiumData).CorSpatialFeatures. The p-values are computed using the Student t Distribution, and adjusted p-values are calculated using the Benjamini & Hochberg (BH, or FDR) method.Bug fixes:
MapFeaturesandMapLabelsif the specified column contains NA values and when using SeuratObject v.5.RegionNeighborsand specifying a column with labels that contains blankspaces, each blank space will be replaced with punctuation marks in the newly formed column names. A warning message will be displayed in these cases.Other: Some other minor things, like fixing typos and updating tests.