Currently, all cell types where the number of cells is less than threshold in at least 1 sample are removed. This leads to a huge loss of cell types (e.g., one small sample lacking a cell type causes the complete drop of this cell type). Chris suggested more flexible option with another threshold on the number or fraction of samples that should contain a cell type
Description of feature
Currently, all cell types where the number of cells is less than threshold in at least 1 sample are removed. This leads to a huge loss of cell types (e.g., one small sample lacking a cell type causes the complete drop of this cell type). Chris suggested more flexible option with another threshold on the number or fraction of samples that should contain a cell type