TODO for the paper

[VladimirShitov]

Description of feature

• [ ] Implement interface to the other methods
  • [x] MOFA
  • [x] Updated MrVI
  • [ ] scLKME
  • [x] Fix composition representation bug: https://github.com/lueckenlab/patient_representation/issues/48
  • [x] DiffusionMDE
  • [ ] mcBERT
  • [ ] R methods
  • • [ ] scITD
  • • [ ] GloScope
  • • [ ] PhEMD
  • • [ ] MUSTARD
• [ ] Add missing datasets
  • [ ] Alzheimer
  • [ ] COPD from Francesca
  • [ ] Stephenson et al
• [ ] Create a viash-based pipeline
  • [x] Downloading the datasets
  • [x] Preprocessing of the datasets
  • [ ] Representation
  • [ ] Evaluation