ecasimiro
commented
3 years ago - Option to read CIFTI files: click.option --iscifti ['y','n'], default 'n' and click.option --mode ['surface', 'subcortex', 'all'], default 'surface'.
- Option to skip TRs: click.option --skip-tr , nargs=2 and multiple possible --> --skip-tr 'file' 2 --skip-tr 'other file' 1
- Option to filter confounds: click.option --confounds-filter or -cf [str], works with regex and multiple possible --> -cf conf1 -cf conf2
lukassnoek