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lukfor / pgs-calc

Applying polygenic scores (PGS) on imputed genotypes
MIT License
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Allele flips etc., #10

Open Bioinf-usr opened 2 years ago

Bioinf-usr commented 2 years ago

Hi Lukas,

In your script for pgs-calc, do you account for allele flipping, strand inconsistencies and removal of ambiguous alleles automatically or does it have to be done beforehand?

Thanks, Dheeraj.

samreenzafer commented 4 months ago

Hi Did you get an answer to this question ? I'm interested in finding out too.