byl18
commented
1 week ago Sorry for the late reply. Thank you for your question. '--dataset' takes the ['Hu','Mix'] list as input, and I recommend that you make changes directly in main.py
Open zhendejuzi opened 1 week ago
byl18
commented
1 week ago Sorry for the late reply. Thank you for your question. '--dataset' takes the ['Hu','Mix'] list as input, and I recommend that you make changes directly in main.py
The parameter input for datasets is "Hu", but during argument parsing, Args.datasets[0] only extracts the first letter.
python scripts/main.py --datasets Hu --cuda 0 --learning_rate 0.0001 --batch_size 16 --epoch 100 --early_stopping 30 Traceback (most recent call last): File "scripts/main.py", line 62, in
main()
File "scripts/main.py", line 59, in main
train_single(Args) if Args.single else train(Args)
File "/data/wusijie/software/OligoFormer/scripts/train.py", line 169, in train
train_df = pd.read_csv(Args.path + Args.datasets[0] + '.csv', dtype=str)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/util/_decorators.py", line 311, in wrapper
return func(*args, kwargs)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 586, in read_csv
return _read(filepath_or_buffer, kwds)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 482, in _read
parser = TextFileReader(filepath_or_buffer, kwds)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 811, in init
self._engine = self._make_engine(self.engine)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/readers.py", line 1040, in _make_engine
return mapping[engine](self.f, **self.options) # type: ignore[call-arg]
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 51, in init
self._open_handles(src, kwds)
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/parsers/base_parser.py", line 229, in _open_handles
errors=kwds.get("encoding_errors", "strict"),
File "/data/wusijie/software/anaconda3/envs/oligoformer/lib/python3.7/site-packages/pandas/io/common.py", line 707, in get_handle
newline="",
FileNotFoundError: [Errno 2] No such file or directory: './data/H.csv'