docker build errors

[skatragadda-nygc]

Describe the bug A clear and concise description of what the bug is. Unable to build docker image. I commented only entrypoint line and did a docker build.

==> Downloading from https://codeload.github.com/jasper-software/jasper/tar.gz/version-2.0.23 Warning: Building netpbm from source as the bottle needs:

• HOMEBREW_CELLAR: any (yours is /home/octopus/build/brew/Cellar)
• HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /home/octopus/build/brew)
• HOMEBREW_REPOSITORY: /home/linuxbrew/.linuxbrew/Homebrew (yours is /home/octopus/build/brew) ==> Cloning https://svn.code.sf.net/p/netpbm/code/stable ==> Checking out 3997 You must: brew install svn Error: Failed to download resource "netpbm" Failure while executing; svn checkout https://svn.code.sf.net/p/netpbm/code/stable /root/.cache/Homebrew/netpbm--svn --quiet -r 3997 exited with 1. Here's the output: You must: brew install svn

-- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done fatal: not a git repository (or any of the parent directories): .git fatal: not a git repository (or any of the parent directories): .git -- Build type: Release -- Installation prefix: /home/octopus/bin -- Could not find hardware support for AVX2 on this machine. -- Linking against boost dynamic libraries -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE CMake Error at build/brew/Cellar/cmake/3.19.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:218 (message): Could NOT find Boost (missing: Boost_INCLUDE_DIR system filesystem program_options date_time log_setup log iostreams timer thread) (Required is at least version "1.65") Call Stack (most recent call first): build/brew/Cellar/cmake/3.19.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:577 (_FPHSA_FAILURE_MESSAGE) build/brew/Cellar/cmake/3.19.1/share/cmake/Modules/FindBoost.cmake:2193 (find_package_handle_standard_args) src/CMakeLists.txt:777 (find_package)

-- Configuring incomplete, errors occurred! See also "/home/octopus/build/CMakeFiles/CMakeOutput.log". See also "/home/octopus/build/CMakeFiles/CMakeError.log". No bin directory found, making one The command '/bin/sh -c /home/octopus/scripts/install.py --dependencies --forests --threads 4' returned a non-zero code: 1

Let us know what needs to be updated. Thanks! Version latest

$ octopus --version
// PASTE OUTPUT HERE

Command Command line to install octopus:

$ 

Command line to run octopus:

$ octopus

Additional context Add any other context about the problem here, e.g.

• Reference [e.g. hg19]. Please provide link to fasta if atypical.
• BAM files (if possible).

[dancooke]

Sorry for the long delay in responding to this. Are you trying to use the Dockerfile provided by Octopus? If so, which version (git commit) of the code do you have?

[cariaso]

Different person, same general issue. I'm on git version d8d26b6b

docker build -t oct1:latest octopus

[+] Building 9829.9s (14/14) FINISHED
 => [internal] load build definition from Dockerfile                       0.1s
 => => transferring dockerfile: 37B                                        0.0s
 => [internal] load .dockerignore                                          0.0s
 => => transferring context: 35B                                           0.0s
 => [internal] load metadata for docker.io/library/ubuntu:latest           2.4s
 => [auth] library/ubuntu:pull token for registry-1.docker.io              0.0s
 => [1/9] FROM docker.io/library/ubuntu:latest@sha256:cf31af331f38d1d7158  0.0s
 => [internal] load build context                                          0.2s
 => => transferring context: 36.29kB                                       0.1s
 => CACHED [2/9] RUN apt-get -y update                                     0.0s
 => CACHED [3/9] RUN apt-get -y install software-properties-common         0.0s
 => CACHED [4/9] RUN apt-get install -y --no-install-recommends apt-utils  0.0s
 => CACHED [5/9] RUN add-apt-repository -y ppa:ubuntu-toolchain-r/test     0.0s
 => CACHED [6/9] RUN apt-get -y install     gcc g++     build-essential    0.0s
 => CACHED [7/9] RUN pip3 install distro                                   0.0s
 => CACHED [8/9] COPY . /opt/octopus                                       0.0s
 => ERROR [9/9] RUN /opt/octopus/scripts/install.py     --dependencies  9826.9s
------
 > [9/9] RUN /opt/octopus/scripts/install.py     --dependencies     --forests     --threads 4     --architecture haswell:
#13 1.133 Cloning into 'brew'...
#13 13.34 ==> Downloading https://ghcr.io/v2/homebrew/portable-ruby/portable-ruby/blobs/sha256:97e639a64dcec285392b53ad804b5334c324f1d2a8bdc2b5087b8bf8051e332f
#13 13.48 #=#=#                                                                 ######################################################################## 100.0%
#13 16.34 ==> Pouring portable-ruby-2.6.3_2.x86_64_linux.bottle.tar.gz
#13 23.10 ==> Homebrew has enabled anonymous aggregate formula and cask analytics.
#13 23.10 Read the analytics documentation (and how to opt-out) here:
#13 23.10   https://docs.brew.sh/Analytics
#13 23.10 No analytics have been recorded yet (nor will be during this `brew` run).
#13 23.10
#13 23.10 ==> Homebrew is run entirely by unpaid volunteers. Please consider donating:
#13 23.12   https://github.com/Homebrew/brew#donations
#13 24.21 ==> Tapping homebrew/core
#13 24.24 Cloning into '/opt/octopus/build/brew/Library/Taps/homebrew/homebrew-core'...
#13 302.3 Tapped 2 commands and 5606 formulae (5,920 files, 455.2MB).
#13 303.1 Already up-to-date.
#13 306.8 Warning: Building pkg-config from source:
#13 306.8   The bottle only works in the default /home/linuxbrew/.linuxbrew location.
#13 307.6 ==> Downloading https://pkgconfig.freedesktop.org/releases/pkg-config-0.29.2.tar.gz
#13 309.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gpatch/manifests/2.7.6
#13 311.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gpatch/blobs/sha256:70df1fb356ca7ccccd277110fcf467ea9fd0dc7337c93ad8ecd39848b081f95c
#13 312.0 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:70df1fb356ca7ccccd277110fcf467ea9fd0dc7337c93ad8ecd39848b081f95c?se=2021-05-04T08%3A40%3A00Z&sig=ed67n5fk0l%2Bj2tr5quyxADQOeeXVeZfXipEadN7OsAs%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 312.8 Warning: Building ncurses from source as the bottle needs:
#13 312.8 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 312.8 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 313.6 ==> Downloading https://ftp.gnu.org/gnu/ncurses/ncurses-6.2.tar.gz
#13 316.2 Warning: Building openssl@1.1 from source as the bottle needs:
#13 316.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 316.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 317.8 ==> Downloading https://curl.haxx.se/ca/cacert-2020-01-01.pem
#13 317.8 ==> Downloading from https://curl.se/ca/cacert-2020-01-01.pem
#13 319.0 ==> Downloading https://cpan.metacpan.org/authors/id/L/LE/LEONT/Test-Harness-3.42.tar.gz
#13 320.1 ==> Downloading https://cpan.metacpan.org/authors/id/E/EX/EXODIST/Test-Simple-1.302175.tar.gz
#13 321.3 ==> Downloading https://cpan.metacpan.org/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.48.tar.gz
#13 322.9 ==> Downloading https://www.openssl.org/source/openssl-1.1.1k.tar.gz
#13 324.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/cmake/manifests/3.20.2
#13 326.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/cmake/blobs/sha256:36c8ac4c985a32d1507ade71ae6eb3aa04e0ca8be65b9312f361973fd76a00c4
#13 327.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:36c8ac4c985a32d1507ade71ae6eb3aa04e0ca8be65b9312f361973fd76a00c4?se=2021-05-04T08%3A40%3A00Z&sig=kwZYAf9C5yXEWbjzpi6FaCFUQcoYjlubStTUDkaXmPk%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 331.3 ==> Installing dependencies for cmake: pkg-config, gpatch, ncurses and openssl@1.1
#13 331.3 ==> Installing cmake dependency: pkg-config
#13 333.4 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/pkg-config/0.29.2_4 --disable-host-tool --with-internal-glib --with-pc-path=/opt/octopus/build/brew/lib/pkgconfig:/opt/octopus/build/brew/share/pkgconfig:/opt/octopus/build/brew/Library/Homebrew/os/linux/pkgconfig --with-system-include-path=/usr/include
#13 365.8 ==> make
#13 381.7 ==> make install
#13 384.1 🍺  /opt/octopus/build/brew/Cellar/pkg-config/0.29.2_4: 11 files, 759.6KB, built in 52 seconds
#13 384.1 ==> Installing cmake dependency: gpatch
#13 384.1 ==> Pouring gpatch--2.7.6.x86_64_linux.bottle.tar.gz
#13 385.7 🍺  /opt/octopus/build/brew/Cellar/gpatch/2.7.6: 10 files, 909.8KB
#13 385.7 ==> Installing cmake dependency: ncurses
#13 387.4 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/ncurses/6.2 --enable-pc-files --with-pkg-config-libdir=/opt/octopus/build/brew/Cellar/ncurses/6.2/lib/pkgconfig --enable-sigwinch --enable-symlinks --enable-widec --with-shared --with-gpm=no --without-ada
#13 406.7 ==> make install
#13 487.5 🍺  /opt/octopus/build/brew/Cellar/ncurses/6.2: 3,900 files, 10.1MB, built in 1 minute 41 seconds
#13 487.5 ==> Installing cmake dependency: openssl@1.1
#13 490.9 ==> perl Makefile.PL INSTALL_BASE=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec
#13 491.4 ==> make PERL5LIB=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec/lib/perl5 CC=gcc-9
#13 492.9 ==> make install
#13 493.5 ==> perl Makefile.PL INSTALL_BASE=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec
#13 493.9 ==> make PERL5LIB=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec/lib/perl5 CC=gcc-9
#13 495.5 ==> make install
#13 496.5 ==> perl Makefile.PL INSTALL_BASE=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec
#13 496.8 ==> make PERL5LIB=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/libexec/lib/perl5 CC=gcc-9
#13 498.6 ==> make install
#13 499.4 ==> perl ./Configure --prefix=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k --openssldir=/opt/octopus/build/brew/etc/openssl@1.1 no-ssl3 no-ssl3-method no-zlib enable-md2 linux-x86_64
#13 502.4 ==> make
#13 610.3 ==> make install MANDIR=/opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k/share/man MANSUFFIX=ssl
#13 671.9 ==> make test
#13 810.2 ==> Downloading https://curl.haxx.se/ca/cacert-2020-01-01.pem
#13 811.6 Already downloaded: /root/.cache/Homebrew/downloads/e2b36a2c425753a7b9d6a8eccb44b33cb7ed93cb91f96dafcf35fa18d8e0513a--cacert-2020-01-01.pem
#13 812.1 ==> Caveats
#13 812.1 A CA file has been bootstrapped using certificates from the system
#13 812.1 keychain. To add additional certificates, place .pem files in
#13 812.1   /opt/octopus/build/brew/etc/openssl@1.1/certs
#13 812.1
#13 812.1 and run
#13 812.1   /opt/octopus/build/brew/opt/openssl@1.1/bin/c_rehash
#13 812.1 ==> Summary
#13 812.1 🍺  /opt/octopus/build/brew/Cellar/openssl@1.1/1.1.1k: 8,372 files, 24.2MB, built in 5 minutes 24 seconds
#13 812.1 ==> Installing cmake
#13 812.1 ==> Pouring cmake--3.20.2.x86_64_linux.bottle.tar.gz
#13 817.8 ==> Caveats
#13 817.8 Emacs Lisp files have been installed to:
#13 817.8   /opt/octopus/build/brew/share/emacs/site-lisp/cmake
#13 817.8 ==> Summary
#13 817.8 🍺  /opt/octopus/build/brew/Cellar/cmake/3.20.2: 6,471 files, 72.2MB
#13 817.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gmp/manifests/6.2.1
#13 819.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gmp/blobs/sha256:47ec066627ce0564e7c6b5da2a3311cdcbf09762dce6bad3f0cad46c1377aabc
#13 820.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:47ec066627ce0564e7c6b5da2a3311cdcbf09762dce6bad3f0cad46c1377aabc?se=2021-05-04T08%3A50%3A00Z&sig=9rdbgo1OYeA8XaJcRALEQbyvOjXiSCErIIwKlWx%2B1FQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 821.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/isl/manifests/0.23
#13 823.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/isl/blobs/sha256:46537a01a0cc82ea18528293b6bac03be7ab14b2fc3a7a28051f1b26e24f6c57
#13 824.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:46537a01a0cc82ea18528293b6bac03be7ab14b2fc3a7a28051f1b26e24f6c57?se=2021-05-04T08%3A50%3A00Z&sig=3KsrmraN9GYKs1XJzo3OWPMffjqobF%2B9txplNGKNxiQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 825.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mpfr/manifests/4.1.0
#13 827.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mpfr/blobs/sha256:5fa04c762dd682c46b3c15d2c28e89a36353717c533e7aaa12298b5202aeeba8
#13 828.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:5fa04c762dd682c46b3c15d2c28e89a36353717c533e7aaa12298b5202aeeba8?se=2021-05-04T08%3A50%3A00Z&sig=9%2BenY%2FPdxqRppT%2BZ%2BFABTrwXEZCduBLA5VxpsbmJMoQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 829.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libmpc/manifests/1.2.1
#13 831.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libmpc/blobs/sha256:c12f0406fb375c08d4c9f699ec2d28099088bb999fe9cceefe9145c001f24f89
#13 832.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:c12f0406fb375c08d4c9f699ec2d28099088bb999fe9cceefe9145c001f24f89?se=2021-05-04T08%3A50%3A00Z&sig=zORmBuLgk2aLIzAIv6BWvPleJtoUXdoWUMOQXymqGXc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 832.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/zlib/manifests/1.2.11
#13 834.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/zlib/blobs/sha256:6f604280b9e056da163b81cef3076b2e39bbd2b8d3cc8c36d27c19c472c760a4
#13 835.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:6f604280b9e056da163b81cef3076b2e39bbd2b8d3cc8c36d27c19c472c760a4?se=2021-05-04T08%3A50%3A00Z&sig=bfdBZ7UsGd9nLxiy9tv1hccIc7ypJc%2Bb9TjkMPnR2Cw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 836.2 Warning: Building binutils from source as the bottle needs:
#13 836.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 836.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 836.9 ==> Downloading https://ftp.gnu.org/gnu/binutils/binutils-2.36.1.tar.xz
#13 841.8 Warning: Building gcc from source as the bottle needs:
#13 841.8 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 841.8 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 842.3 ==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/6a83f36d/gcc/bigsur_2.patch
#13 843.4 ==> Downloading https://ftp.gnu.org/gnu/gcc/gcc-10.2.0/gcc-10.2.0.tar.xz
#13 854.0 ==> Installing dependencies for gcc: gmp, isl, mpfr, libmpc, zlib and binutils
#13 854.0 ==> Installing gcc dependency: gmp
#13 854.0 ==> Pouring gmp--6.2.1.x86_64_linux.bottle.tar.gz
#13 855.9 🍺  /opt/octopus/build/brew/Cellar/gmp/6.2.1: 23 files, 3.9MB
#13 855.9 ==> Installing gcc dependency: isl
#13 855.9 ==> Pouring isl--0.23.x86_64_linux.bottle.tar.gz
#13 857.7 🍺  /opt/octopus/build/brew/Cellar/isl/0.23: 73 files, 6.6MB
#13 857.7 ==> Installing gcc dependency: mpfr
#13 857.7 ==> Pouring mpfr--4.1.0.x86_64_linux.bottle.tar.gz
#13 859.4 🍺  /opt/octopus/build/brew/Cellar/mpfr/4.1.0: 30 files, 7.9MB
#13 859.4 ==> Installing gcc dependency: libmpc
#13 859.4 ==> Pouring libmpc--1.2.1.x86_64_linux.bottle.tar.gz
#13 861.0 🍺  /opt/octopus/build/brew/Cellar/libmpc/1.2.1: 14 files, 549.9KB
#13 861.0 ==> Installing gcc dependency: zlib
#13 861.0 ==> Pouring zlib--1.2.11.x86_64_linux.bottle.tar.gz
#13 862.6 🍺  /opt/octopus/build/brew/Cellar/zlib/1.2.11: 12 files, 424.2KB
#13 862.6 ==> Installing gcc dependency: binutils
#13 873.9 ==> ./configure --enable-deterministic-archives --prefix=/opt/octopus/build/brew/Cellar/binutils/2.36.1 --infodir=/opt/octopus/build/brew/Cellar/binutils/2.36.1/share/info --mandir=/opt/octopus/build/brew/Cellar/binutils/2.36.1/share/man --disable-werror --enable-interwork --enable-multilib --enable-64-bit-bfd --enable-gold --enable-plugins --enable-targets=all --with-system-zlib --disable-nls
#13 876.7 ==> make
#13 1322.5 ==> make install
#13 1333.4 ==> strip /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/ar /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/elfedit /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/nm /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/windres /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/objcopy /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/as /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/sysdump /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/ld.gold /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/srconv /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/addr2line /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/strings /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/ranlib /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/windmc /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/size /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/readelf /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/coffdump /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/gprof /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/ld.bfd /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/strip /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/dwp /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/dllwrap /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/c++filt /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/ld /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/gold /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/objdump /opt/octopus/build/brew/Cellar/binutils/2.36.1/bin/dlltool /opt/octopus/build/brew/Cellar/binutils/2.36.1/lib/libctf.a /opt/octopus/build/brew/Cellar/binutils/2.36.1/lib/libopcodes.a /opt/octopus/build/brew/Cellar/binutils/2.36.1/lib/libbfd.a /opt/octopus/build/brew/Cellar/binutils/2.36.1/lib/libctf-nobfd.a
#13 1344.3 🍺  /opt/octopus/build/brew/Cellar/binutils/2.36.1: 4,617 files, 214.4MB, built in 8 minutes 1 second
#13 1344.3 ==> Installing gcc
#13 1390.7 ==> Patching
#13 1390.7 ==> Applying bigsur_2.patch
#13 1390.7 patching file gcc/config/host-darwin.c
#13 1390.7 patching file gcc/config/darwin-c.c
#13 1390.7 patching file gcc/config/darwin-driver.c
#13 1390.7 patching file gcc/testsuite/gcc.dg/darwin-minversion-link.c
#13 1390.8 patching file gcc/config/darwin-driver.c
#13 1390.8 patching file gcc/config/darwin-driver.c
#13 1390.8 patching file libsanitizer/configure.tgt
#13 1390.8 patching file gcc/configure
#13 1390.8 Hunk #1 succeeded at 15485 (offset -5 lines).
#13 1390.8 patching file libatomic/configure
#13 1390.8 patching file libbacktrace/configure
#13 1390.8 patching file libcc1/Makefile.am
#13 1390.8 patching file libcc1/Makefile.in
#13 1390.8 patching file libcc1/configure
#13 1390.8 patching file libcc1/configure.ac
#13 1390.8 patching file libffi/configure
#13 1390.8 patching file libgfortran/configure
#13 1390.8 patching file libgomp/Makefile.in
#13 1390.8 patching file libgomp/configure
#13 1390.8 patching file libhsail-rt/configure
#13 1390.8 patching file libitm/configure
#13 1390.8 patching file libitm/configure.tgt
#13 1390.8 patching file libobjc/configure
#13 1390.8 patching file libphobos/configure
#13 1390.8 patching file libquadmath/configure
#13 1390.8 patching file libsanitizer/configure
#13 1390.8 patching file libsanitizer/configure.tgt
#13 1390.8 patching file libssp/configure
#13 1390.8 patching file libstdc++-v3/configure
#13 1390.8 patching file libtool.m4
#13 1390.8 patching file libvtv/configure
#13 1390.8 patching file zlib/configure
#13 1390.8 ==> ../configure --prefix=/opt/octopus/build/brew/Cellar/gcc/10.2.0_4 --libdir=/opt/octopus/build/brew/Cellar/gcc/10.2.0_4/lib/gcc/10 --disable-nls --enable-checking=release --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-10 --with-gmp=/opt/octopus/build/brew/opt/gmp --with-mpfr=/opt/octopus/build/brew/opt/mpfr --with-mpc=/opt/octopus/build/brew/opt/libmpc --with-isl=/opt/octopus/build/brew/opt/isl --with-pkgversion=Homebrew GCC 10.2.0_4 --with-bugurl=https://github.com/Homebrew/linuxbrew-core/issues --with-boot-ldflags=-static-libstdc++ -static-libgcc  --disable-multilib
#13 1395.1 ==> make
#13 4795.1 ==> make install-strip
#13 4825.0 ==> Creating the GCC specs file: /opt/octopus/build/brew/Cellar/gcc/10.2.0_4/lib/gcc/10/gcc/x86_64-pc-linux-gnu/10.2.0/specs
#13 4826.3 🍺  /opt/octopus/build/brew/Cellar/gcc/10.2.0_4: 1,491 files, 256.5MB, built in 58 minutes 1 second
#13 4826.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/icu4c/manifests/69.1
#13 4828.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/icu4c/blobs/sha256:82d3861ec48854128519eb3c959542105086aa4d7013bf0a0b8bf56641822e5a
#13 4829.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:82d3861ec48854128519eb3c959542105086aa4d7013bf0a0b8bf56641822e5a?se=2021-05-04T09%3A55%3A00Z&sig=ToabO7G0hso7WO1tyVplJS2B%2BPxofHL2CONv0HtznYE%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4833.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/bzip2/manifests/1.0.8-1
#13 4835.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/bzip2/blobs/sha256:2a4cbb681a3aeda2361625bd10d329e47bf986feaccd50bf3a1dce7753ad42d6
#13 4836.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:2a4cbb681a3aeda2361625bd10d329e47bf986feaccd50bf3a1dce7753ad42d6?se=2021-05-04T09%3A55%3A00Z&sig=dXuJWVPcidqHY%2Fmarbo1olhnDjjNwG9Z7Rvp1UbJGZA%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4837.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/boost/manifests/1.75.0_4
#13 4838.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/boost/blobs/sha256:ac19f7acb73cce71ace98f645817ef455075ee50424364686e50a978f8baa3e4
#13 4839.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:ac19f7acb73cce71ace98f645817ef455075ee50424364686e50a978f8baa3e4?se=2021-05-04T09%3A55%3A00Z&sig=qYhxu7OlyNKOQLsMmpLLJD%2FSLbg2neqM9etlRDcfUnE%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4844.0 ==> Installing dependencies for boost: icu4c and bzip2
#13 4844.0 ==> Installing boost dependency: icu4c
#13 4844.0 ==> Pouring icu4c--69.1.x86_64_linux.bottle.tar.gz
#13 4848.1 🍺  /opt/octopus/build/brew/Cellar/icu4c/69.1: 259 files, 79MB
#13 4848.1 ==> Installing boost dependency: bzip2
#13 4848.1 ==> Pouring bzip2--1.0.8.x86_64_linux.bottle.1.tar.gz
#13 4849.9 🍺  /opt/octopus/build/brew/Cellar/bzip2/1.0.8: 30 files, 549.7KB
#13 4849.9 ==> Installing boost
#13 4849.9 ==> Pouring boost--1.75.0_4.x86_64_linux.bottle.tar.gz
#13 4863.3 🍺  /opt/octopus/build/brew/Cellar/boost/1.75.0_4: 15,137 files, 224.2MB
#13 4872.5 ==> Caveats
#13 4872.5 ==> openssl@1.1
#13 4872.5 A CA file has been bootstrapped using certificates from the system
#13 4872.5 keychain. To add additional certificates, place .pem files in
#13 4872.5   /opt/octopus/build/brew/etc/openssl@1.1/certs
#13 4872.5
#13 4872.5 and run
#13 4872.5   /opt/octopus/build/brew/opt/openssl@1.1/bin/c_rehash
#13 4872.5 ==> cmake
#13 4872.5 Emacs Lisp files have been installed to:
#13 4872.5   /opt/octopus/build/brew/share/emacs/site-lisp/cmake
#13 4877.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xz/manifests/5.2.5
#13 4880.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xz/blobs/sha256:676b0e178b3e7644f86385cb2497ac5ec490e2222ba3d0147e28bd85aff365cf
#13 4881.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:676b0e178b3e7644f86385cb2497ac5ec490e2222ba3d0147e28bd85aff365cf?se=2021-05-04T09%3A55%3A00Z&sig=8sKVe430LlQ4uHBEa%2Bps%2FciTA4xp%2B6iV3oVbmsVQtUw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4882.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/brotli/manifests/1.0.9
#13 4884.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/brotli/blobs/sha256:079fe73a868cd0c2b8086d902a88d49ab03921a553ae860a6a3742e709c52c4d
#13 4885.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:079fe73a868cd0c2b8086d902a88d49ab03921a553ae860a6a3742e709c52c4d?se=2021-05-04T09%3A55%3A00Z&sig=%2BXMw1XFrzhY5Yr6FCw4jTTRUg1Mg49LHmYXXm3ncMJs%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4886.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/readline/manifests/8.1
#13 4888.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/readline/blobs/sha256:cf7ae93f4dc5560c7c7fac35d3fbb7f528a43f3084daf2273e67032d131bdb04
#13 4888.9 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:cf7ae93f4dc5560c7c7fac35d3fbb7f528a43f3084daf2273e67032d131bdb04?se=2021-05-04T09%3A55%3A00Z&sig=MQXDrBXlFbcZBh6xYxJ96LDOjJSDGsIM0ILHHU7jh3E%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4889.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxml2/manifests/2.9.10_2
#13 4891.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxml2/blobs/sha256:9488f3b9a677da4ac9fda9f75bc7f966e96c6a99bb8708ad7e6a83207eb7aee0
#13 4892.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:9488f3b9a677da4ac9fda9f75bc7f966e96c6a99bb8708ad7e6a83207eb7aee0?se=2021-05-04T09%3A55%3A00Z&sig=32oty28lLcTcUrAUJvflYkvu6iiQXm107yLLjhcCPyo%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4893.4 Warning: Building gettext from source as the bottle needs:
#13 4893.4 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4893.4 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4894.1 ==> Downloading https://ftp.gnu.org/gnu/gettext/gettext-0.21.tar.xz
#13 4900.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libunistring/manifests/0.9.10
#13 4901.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libunistring/blobs/sha256:c3abe7fa8b2fb314e2bbbe003e9db550148e95a2816e3c95e30199178bfe578b
#13 4902.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:c3abe7fa8b2fb314e2bbbe003e9db550148e95a2816e3c95e30199178bfe578b?se=2021-05-04T09%3A55%3A00Z&sig=Ks1sZLKamXhLKRTX1dFusPvNBHZo%2FFNujmPQT0KJ7xk%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4903.8 Warning: Building libidn2 from source as the bottle needs:
#13 4903.8 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4903.8 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4904.4 ==> Downloading https://ftp.gnu.org/gnu/libidn/libidn2-2.3.0.tar.gz
#13 4907.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/expat/manifests/2.3.0
#13 4908.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/expat/blobs/sha256:be7e6b9a7057e8a44bce3587b41f8e54ab0ab97c984a054709b92add58861d94
#13 4909.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:be7e6b9a7057e8a44bce3587b41f8e54ab0ab97c984a054709b92add58861d94?se=2021-05-04T09%3A55%3A00Z&sig=LNGt%2BlzEWSZvnRtteTnavW6qQVYCY%2BfqUYf9FM12lP8%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4910.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libmetalink/manifests/0.1.3
#13 4912.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libmetalink/blobs/sha256:7f8f2b1fbedd2c845252928f3f379cc3d411fca1cd6d546f26e7d4d084017fa7
#13 4913.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:7f8f2b1fbedd2c845252928f3f379cc3d411fca1cd6d546f26e7d4d084017fa7?se=2021-05-04T09%3A55%3A00Z&sig=ymo11%2F0HFaMt7tCvgDSbF6FIJNDv0krlr9Hd62F7Ysw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4913.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libssh2/manifests/1.9.0_1
#13 4915.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libssh2/blobs/sha256:07fa92938502deb9633103511ef95a7a54a9bd1a42955b63f0e1787b01169d3f
#13 4916.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:07fa92938502deb9633103511ef95a7a54a9bd1a42955b63f0e1787b01169d3f?se=2021-05-04T09%3A55%3A00Z&sig=cQws1dkClv64r625LbyXBucrQDUIFlUsSuqHa%2Ff6s3U%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4917.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/c-ares/manifests/1.17.1
#13 4919.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/c-ares/blobs/sha256:4a8bd4ff5f8e8f06e623405b9d01344537ed93496e8713c2ac11cfbc5b26365c
#13 4920.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:4a8bd4ff5f8e8f06e623405b9d01344537ed93496e8713c2ac11cfbc5b26365c?se=2021-05-04T09%3A55%3A00Z&sig=l4MbdG5oUrxsFK%2Bh40RDu%2FJhpLZIVcxGU76j%2BLsXmYE%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4920.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jemalloc/manifests/5.2.1_1
#13 4922.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jemalloc/blobs/sha256:08def7a0bdddf9311aeca1d40b93f4ac1b8b0c13ded3c66dc8ec44e517cff233
#13 4923.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:08def7a0bdddf9311aeca1d40b93f4ac1b8b0c13ded3c66dc8ec44e517cff233?se=2021-05-04T09%3A55%3A00Z&sig=9OP3YCPBXdOA%2BSsVZBldw1oQKoJ06KpXIcoZkMbT7OI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4924.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libev/manifests/4.33
#13 4926.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libev/blobs/sha256:0a2e30ca1379034e45954d63729f03aa55ad265f602d7f3e86d31aa78b81b292
#13 4927.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:0a2e30ca1379034e45954d63729f03aa55ad265f602d7f3e86d31aa78b81b292?se=2021-05-04T09%3A55%3A00Z&sig=a8tA%2FB5X%2BfEX0AscK%2FlnmaJV%2FebI7qGrAfgJxaBPEzM%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4927.9 Warning: Building nghttp2 from source as the bottle needs:
#13 4927.9 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4927.9 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4928.5 ==> Downloading https://github.com/nghttp2/nghttp2/commit/829258e7038fe7eff849677f1ccaeca3e704eb67.patch?full_index=1
#13 4930.4 ==> Downloading https://github.com/nghttp2/nghttp2/releases/download/v1.43.0/nghttp2-1.43.0.tar.xz
#13 4930.4 ==> Downloading from https://github-releases.githubusercontent.com/11452676/f7185980-6596-11eb-92c3-bb970918bb51?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210504%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210504T094912Z&X-Amz-Expires=300&X-Amz-Signature=9914dd1526fe9af20bad5d006dce5e17e61b19af20ed2bceb4722624eec3f082&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=11452676&response-content-disposition=attachment%3B%20filename%3Dnghttp2-1.43.0.tar.xz&response-content-type=application%2Foctet-stream
#13 4931.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/berkeley-db/manifests/18.1.40
#13 4933.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/berkeley-db/blobs/sha256:9935bb07d8c09bc317aa61776b12b0277b136d1d5dfb65feb85c786a71a93e37
#13 4934.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:9935bb07d8c09bc317aa61776b12b0277b136d1d5dfb65feb85c786a71a93e37?se=2021-05-04T09%3A55%3A00Z&sig=9qDYRjmQXBIJRlxV7cMBowm4CtuMyb8y49x67oVFn%2Fs%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4935.5 Warning: Building gdbm from source as the bottle needs:
#13 4935.5 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4935.5 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4936.1 ==> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.19.tar.gz
#13 4938.2 Warning: Building perl from source as the bottle needs:
#13 4938.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4938.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4938.8 ==> Downloading https://www.cpan.org/src/5.0/perl-5.32.1.tar.xz
#13 4941.0 Warning: Building texinfo from source as the bottle needs:
#13 4941.0 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4941.0 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4941.6 ==> Downloading https://ftp.gnu.org/gnu/texinfo/texinfo-6.7.tar.xz
#13 4944.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jpeg/manifests/9d
#13 4946.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jpeg/blobs/sha256:a5509c05cbd1e34d667bf1036b5d0ac11ed257faa46404032852921847dee4c6
#13 4947.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:a5509c05cbd1e34d667bf1036b5d0ac11ed257faa46404032852921847dee4c6?se=2021-05-04T09%3A55%3A00Z&sig=HeXfSt%2FH3a65GXgHPJyTZsq55l56O1PKIbjhsGSOjtg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4948.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libtiff/manifests/4.3.0
#13 4950.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libtiff/blobs/sha256:e213d552390bfd246a1a937dd550f5326cfc379d36654343cbd86cc5b7ac79e7
#13 4951.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:e213d552390bfd246a1a937dd550f5326cfc379d36654343cbd86cc5b7ac79e7?se=2021-05-04T09%3A55%3A00Z&sig=hbH%2F7y%2BY6BK5j8dNldMbVKIBpX37MWLtHTQIZKYcK5g%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4952.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpng/manifests/1.6.37
#13 4954.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpng/blobs/sha256:c5d219b27780c730af50693110ed2c79e50200d3595c7e395998fe3950354ec9
#13 4955.0 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:c5d219b27780c730af50693110ed2c79e50200d3595c7e395998fe3950354ec9?se=2021-05-04T09%3A55%3A00Z&sig=SRmCAqc3LjsIeWdjPm0b4rn4cSo01fsKkdESC4P2%2FGo%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4955.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/freetype/manifests/2.10.4
#13 4957.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/freetype/blobs/sha256:4b510049ab0cac10c3cd21c481ae2275d506de200161649903a7eff3241b1b26
#13 4958.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:4b510049ab0cac10c3cd21c481ae2275d506de200161649903a7eff3241b1b26?se=2021-05-04T09%3A55%3A00Z&sig=Do5q3HJwi%2BrevUUL0qDCz25%2FuGuHnxf3DNSJQeLp78M%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4961.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gperf/manifests/3.1
#13 4963.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/gperf/blobs/sha256:901587d856ef1e6c4d58ce9259eb9a3f85bfa29635b6a3d0fa3c68ad8e8a2b1c
#13 4964.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:901587d856ef1e6c4d58ce9259eb9a3f85bfa29635b6a3d0fa3c68ad8e8a2b1c?se=2021-05-04T09%3A55%3A00Z&sig=Dx6l36tgkduzntg2jEORfEiryltrAteuFOZKZIVtKVg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4964.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/json-c/manifests/0.15
#13 4966.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/json-c/blobs/sha256:a758d616079a3ef989fccb1f595a930b9fb849f0fcc6a6d235f951233487d637
#13 4967.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:a758d616079a3ef989fccb1f595a930b9fb849f0fcc6a6d235f951233487d637?se=2021-05-04T09%3A55%3A00Z&sig=FdoBvS3We8bfHB4b26BJsIXDWSfNVfHP8EAKQsUNjrg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4968.2 Warning: Building util-linux from source as the bottle needs:
#13 4968.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4968.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4968.6 ==> Downloading https://mirrors.edge.kernel.org/pub/linux/utils/util-linux/v2.36/util-linux-2.36.2.tar.xz
#13 4970.2 Warning: Building fontconfig from source:
#13 4970.2   The bottle needs to be installed into /home/linuxbrew/.linuxbrew.
#13 4970.8 ==> Downloading https://github.com/freedesktop/fontconfig/commit/6def66164a36eed968aae872d76acfac3173d44a.patch?full_index=1
#13 4972.5 ==> Downloading https://www.freedesktop.org/software/fontconfig/release/fontconfig-2.13.1.tar.bz2
#13 4974.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libidn/manifests/1.36
#13 4976.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libidn/blobs/sha256:3b8315e4b1b0c1139294c8d706dd0911e7f029053ab3a865b442aca4fd6a4061
#13 4976.9 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:3b8315e4b1b0c1139294c8d706dd0911e7f029053ab3a865b442aca4fd6a4061?se=2021-05-04T09%3A55%3A00Z&sig=SelhTGjzVYvQqdTUwYbFMiVs2EYYa%2B0vYO4Bi8sVfEc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4977.6 Warning: Building ghostscript from source as the bottle needs:
#13 4977.6 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 4977.6 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 4978.4 ==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/98c39e09/ghostscript/config.patch
#13 4980.2 ==> Downloading https://downloads.sourceforge.net/project/gs-fonts/gs-fonts/8.11%20%28base%2035%2C%20GPL%29/ghostscript-fonts-std-8.11.tar.gz
#13 4980.2 ==> Downloading from https://pilotfiber.dl.sourceforge.net/project/gs-fonts/gs-fonts/8.11%20%28base%2035%2C%20GPL%29/ghostscript-fonts-std-8.11.tar.gz
#13 4984.1 ==> Downloading https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs9533/ghostpdl-9.53.3.tar.gz
#13 4984.1 ==> Downloading from https://github-releases.githubusercontent.com/50461376/4b83b080-03ce-11eb-9a21-57be831b4723?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210504%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210504T095006Z&X-Amz-Expires=300&X-Amz-Signature=a6dbd9d949133436372e466ebc5d4fab93203c9d864773d29c99763f8e3fc8ca&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=50461376&response-content-disposition=attachment%3B%20filename%3Dghostpdl-9.53.3.tar.gz&response-content-type=application%2Foctet-stream
#13 4990.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/util-macros/manifests/1.19.3
#13 4992.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/util-macros/blobs/sha256:cc45f4dae575cbfcbe7f968fdf04b94b6cc177b43fe848562cbdc5dfbec17326
#13 4993.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:cc45f4dae575cbfcbe7f968fdf04b94b6cc177b43fe848562cbdc5dfbec17326?se=2021-05-04T10%3A00%3A00Z&sig=x7KCD096mI77OuUkVWJIcWfA6nU5Cb3iIoLghro6U4I%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4994.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xtrans/manifests/1.4.0
#13 4996.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xtrans/blobs/sha256:4241fbb0a5fa9f83f5c5bbccf1cbe860140adb9872ec24fc090c44b693c08c68
#13 4997.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:4241fbb0a5fa9f83f5c5bbccf1cbe860140adb9872ec24fc090c44b693c08c68?se=2021-05-04T10%3A00%3A00Z&sig=nfRZOyD98G8Azy5oSlWqLRA6M%2FzYYrQzkS2IAm2S%2F9I%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 4997.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpthread-stubs/manifests/0.4
#13 4999.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpthread-stubs/blobs/sha256:56f9851df3cdf76b43e63cab025c742ff54c62794c5a0bc93cf4364323d77421
#13 5000.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:56f9851df3cdf76b43e63cab025c742ff54c62794c5a0bc93cf4364323d77421?se=2021-05-04T10%3A00%3A00Z&sig=tKofBrq%2FvDHZT2Ip0EB1tH1abIN4O%2BAqHOfdEB7fr%2B4%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5000.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xorgproto/manifests/2021.4
#13 5002.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xorgproto/blobs/sha256:f8a7c3b5c61c48affa144576747aa93a18c49f8b861b782e45aeb643a2708363
#13 5003.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:f8a7c3b5c61c48affa144576747aa93a18c49f8b861b782e45aeb643a2708363?se=2021-05-04T10%3A00%3A00Z&sig=EPtsb7G79j4I5QcKDzapsr2KR6YOGmvxl%2BD4U5Msro8%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5004.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxau/manifests/1.0.9
#13 5006.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxau/blobs/sha256:6be192d4f2b68b34f86d0a1a2e8e5324a2124bca531972464942e56cc4339e8d
#13 5007.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:6be192d4f2b68b34f86d0a1a2e8e5324a2124bca531972464942e56cc4339e8d?se=2021-05-04T10%3A00%3A00Z&sig=SnEoXc311sR%2BSDXlT%2BP9v0NsZxFO8fCVhbB3BFRnMtA%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5007.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxdmcp/manifests/1.1.3
#13 5009.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxdmcp/blobs/sha256:2f3a17fca2a8c87f3b6b6c7b9dc170b90b64d1fe8ad46b4f9b63fe2513bacc25
#13 5010.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:2f3a17fca2a8c87f3b6b6c7b9dc170b90b64d1fe8ad46b4f9b63fe2513bacc25?se=2021-05-04T10%3A00%3A00Z&sig=V62MpaJrQup1ZX9GIzWj4wmzfTFGkLED2%2Bimxtoo3wQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5011.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxcb/manifests/1.14_1-1
#13 5012.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxcb/blobs/sha256:1a4eed8760ef7dc1a20d5a5b0f4da7430738a08c2bb7dddc97766a6bf4ee2ff5
#13 5013.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:1a4eed8760ef7dc1a20d5a5b0f4da7430738a08c2bb7dddc97766a6bf4ee2ff5?se=2021-05-04T10%3A00%3A00Z&sig=P04exrkVTmiCJcanvCvPfcnK67PKkVB5Oao2yAB5ivA%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5014.6 Warning: Building libx11 from source as the bottle needs:
#13 5014.6 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5014.6 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5015.2 ==> Downloading https://www.x.org/archive/individual/lib/libX11-1.7.0.tar.bz2
#13 5016.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxext/manifests/1.3.4
#13 5018.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxext/blobs/sha256:ec21c900415cb14a9e86a96b00d9c2eaa1c22b4e79babad8748ac072ba52252b
#13 5019.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:ec21c900415cb14a9e86a96b00d9c2eaa1c22b4e79babad8748ac072ba52252b?se=2021-05-04T10%3A00%3A00Z&sig=e0uI3tC9scb03vCaqkTMzPOKmVM3BO2EXu2GQ20bgPI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5020.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxfixes/manifests/5.0.3
#13 5021.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxfixes/blobs/sha256:3aaba846570380f7dbf5cf7f93280866318a7730c9c5fd38fd1ad275aec037bd
#13 5022.9 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:3aaba846570380f7dbf5cf7f93280866318a7730c9c5fd38fd1ad275aec037bd?se=2021-05-04T10%3A00%3A00Z&sig=8RMbRt4R5Nxti37rd9NNx39lgIb1k2ohSHna84T2s7o%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5023.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxi/manifests/1.7.10
#13 5025.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxi/blobs/sha256:3f8973202e820185cf4976d01580f63ef9f43d299f7a983415abc08a5e658a1d
#13 5026.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:3f8973202e820185cf4976d01580f63ef9f43d299f7a983415abc08a5e658a1d?se=2021-05-04T10%3A00%3A00Z&sig=6d9EkBhDZBD7A5XjbJCGC0slEF%2FZiWKwVoY6fAj0XGQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5026.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxrender/manifests/0.9.10
#13 5028.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxrender/blobs/sha256:f00b409bc70ad54a54f07f3605a6c0be3fdc196ac330e9376a6183d92ad495c0
#13 5029.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:f00b409bc70ad54a54f07f3605a6c0be3fdc196ac330e9376a6183d92ad495c0?se=2021-05-04T10%3A00%3A00Z&sig=zshHpHEo3V44dr1wb4uRfXw4w0nPutei%2FmjP3r2%2Besc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5030.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxrandr/manifests/1.5.2
#13 5031.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxrandr/blobs/sha256:dde0fd3c63a0471016e822a59d83826b530104047c0962163fff97ff06d84eb2
#13 5032.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:dde0fd3c63a0471016e822a59d83826b530104047c0962163fff97ff06d84eb2?se=2021-05-04T10%3A00%3A00Z&sig=EyhYSBz%2B8mfDgmNUjmGnJia6ew5m5QxnlAibBXuQCCI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5033.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxxf86vm/manifests/1.1.4
#13 5035.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxxf86vm/blobs/sha256:3f2182663cf20729f2236026e21edbde1f34918b1c267d742ad6ffc818d5aa76
#13 5036.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:3f2182663cf20729f2236026e21edbde1f34918b1c267d742ad6ffc818d5aa76?se=2021-05-04T10%3A00%3A00Z&sig=odVt%2FbbD0l1OTNsptPU6o2%2BDs6M31GkH76cLlyX5udE%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5036.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mpdecimal/manifests/2.5.1
#13 5038.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mpdecimal/blobs/sha256:ed8fc5c5367e699f222010c2a387785f64dfa185c536843eb5f5cf3ae0b3ce3c
#13 5039.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:ed8fc5c5367e699f222010c2a387785f64dfa185c536843eb5f5cf3ae0b3ce3c?se=2021-05-04T10%3A00%3A00Z&sig=N1p%2FB%2FXLsVdeunaFnplMqdc%2FtariQnFBoBLtAUoKzRg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5040.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/sqlite/manifests/3.35.5
#13 5042.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/sqlite/blobs/sha256:9b1a4c7d1bcde097e2b645bd0c653290ac6202fad8cdb18420b867c465fa0a93
#13 5043.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:9b1a4c7d1bcde097e2b645bd0c653290ac6202fad8cdb18420b867c465fa0a93?se=2021-05-04T10%3A00%3A00Z&sig=scp1%2BvorC3MbWUJu1RPYIcdHKQ6zJwfA5dj5NRD%2BHEY%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5044.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libffi/manifests/3.3_4
#13 5046.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libffi/blobs/sha256:f8f38e0f46836427553fa73de7885f6b9b12bb7330dc8ccaa0529908472f2d12
#13 5047.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:f8f38e0f46836427553fa73de7885f6b9b12bb7330dc8ccaa0529908472f2d12?se=2021-05-04T10%3A00%3A00Z&sig=JVoocTmb4PSHak4L9qRPYLzfXfVDwVbnsiT2i34pUWM%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5047.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/unzip/manifests/6.0_7
#13 5049.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/unzip/blobs/sha256:7f64b1d75f83c936125e0ae873668c992ca1f2041480f899b178959da4cafa1b
#13 5050.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:7f64b1d75f83c936125e0ae873668c992ca1f2041480f899b178959da4cafa1b?se=2021-05-04T10%3A00%3A00Z&sig=qfBOPEj%2Bi9mbnj6C7CslK2MCUrpyMHGLAl4GLL9iQHw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5051.2 Warning: Building python@3.9 from source as the bottle needs:
#13 5051.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5051.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5051.9 ==> Downloading https://www.bytereef.org/contrib/decimal.diff
#13 5052.8 ==> Downloading https://files.pythonhosted.org/packages/94/75/05e1d69c61c4dfaf65ad12785cd18bedc1e0129976c55914d6aea59c7da8/setuptools-54.2.0.tar.gz
#13 5054.1 ==> Downloading https://files.pythonhosted.org/packages/b7/2d/ad02de84a4c9fd3b1958dc9fb72764de1aa2605a9d7e943837be6ad82337/pip-21.0.1.tar.gz
#13 5055.4 ==> Downloading https://files.pythonhosted.org/packages/ed/46/e298a50dde405e1c202e316fa6a3015ff9288423661d7ea5e8f22f589071/wheel-0.36.2.tar.gz
#13 5056.4 ==> Downloading https://www.python.org/ftp/python/3.9.4/Python-3.9.4.tar.xz
#13 5059.2 Warning: Building ninja from source as the bottle needs:
#13 5059.2 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5059.2 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5060.4 ==> Downloading https://github.com/ninja-build/ninja/archive/v1.10.2.tar.gz
#13 5060.4 ==> Downloading from https://codeload.github.com/ninja-build/ninja/tar.gz/v1.10.2
#13 5062.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/meson/manifests/0.58.0
#13 5064.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/meson/blobs/sha256:6cc0fa15197f35397c76e863bf938fa8838f46e7a9b1853985ac7ad33857fd17
#13 5065.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:6cc0fa15197f35397c76e863bf938fa8838f46e7a9b1853985ac7ad33857fd17?se=2021-05-04T10%3A00%3A00Z&sig=p9MZY7kY%2B%2F6eZbdqOsq2h1XW9v2SzCJRtWPqgPUsEfM%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5065.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxdamage/manifests/1.1.5
#13 5067.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxdamage/blobs/sha256:bfc0ac85f89a4dcc1e94991bef37212d55607dc7c7b9708f3a1845ee9b456c4f
#13 5068.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:bfc0ac85f89a4dcc1e94991bef37212d55607dc7c7b9708f3a1845ee9b456c4f?se=2021-05-04T10%3A00%3A00Z&sig=5KE%2FuY3jJA6sgAtfUbY0YM3lHV%2B18q9iUDAt4pI%2B9hw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5069.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/m4/manifests/1.4.18-1
#13 5071.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/m4/blobs/sha256:1552dd0379252680e0c32085df6b6ab59aa32f45be389ff18620a073a8f3c78c
#13 5072.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:1552dd0379252680e0c32085df6b6ab59aa32f45be389ff18620a073a8f3c78c?se=2021-05-04T10%3A00%3A00Z&sig=oEvIJ%2F0Ql7jwJzlsYPYYvIOP9IK8hjmswlFAfCpK8v0%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5072.6 Warning: Building bison from source as the bottle needs:
#13 5072.6 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5072.6 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5073.2 ==> Downloading https://ftp.gnu.org/gnu/bison/bison-3.7.6.tar.xz
#13 5075.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/help2man/manifests/1.48.3
#13 5077.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/help2man/blobs/sha256:f6d7f77427e5c2e5c2185ac56df4e04f05d8575a245e54de9ddfa558192bb2dc
#13 5078.9 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:f6d7f77427e5c2e5c2185ac56df4e04f05d8575a245e54de9ddfa558192bb2dc?se=2021-05-04T10%3A00%3A00Z&sig=SZKRrlUPkRajrvE0Seabii2ZUKNUykDzP2NMwSKTBoc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5079.5 Warning: Building flex from source as the bottle needs:
#13 5079.5 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5079.5 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5080.5 ==> Downloading https://github.com/westes/flex/releases/download/v2.6.4/flex-2.6.4.tar.gz
#13 5080.5 ==> Downloading from https://github-releases.githubusercontent.com/14521001/23794388-327c-11e7-8219-c41432b94acf?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210504%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210504T095142Z&X-Amz-Expires=300&X-Amz-Signature=857522379f884a5331eee375587f647dc373975f05a6e646ed144ea958d8360a&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=14521001&response-content-disposition=attachment%3B%20filename%3Dflex-2.6.4.tar.gz&response-content-type=application%2Foctet-stream
#13 5081.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libedit/manifests/20210419-3.1
#13 5083.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libedit/blobs/sha256:80b7ec53c208ab5b6c0a1308aafa7f31e3f44f216ef9ab8fbd01d90d8661054d
#13 5084.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:80b7ec53c208ab5b6c0a1308aafa7f31e3f44f216ef9ab8fbd01d90d8661054d?se=2021-05-04T10%3A00%3A00Z&sig=o63nXnfnKFPjW3ZQJCcdNlTzhYQcE%2FfR9ALlTuS5zc8%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5084.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libelf/manifests/0.8.13_1
#13 5086.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libelf/blobs/sha256:7bf880eee47f3426bf118683c699ef1b533e8a1d2f76908e481c53e6c93bb5eb
#13 5087.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:7bf880eee47f3426bf118683c699ef1b533e8a1d2f76908e481c53e6c93bb5eb?se=2021-05-04T10%3A00%3A00Z&sig=9MiOPgBa9aSrqNNE9sx73t%2By9Dl85tJ50qvmyMng%2BuQ%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5088.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/llvm/manifests/12.0.0-1
#13 5089.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/llvm/blobs/sha256:1ed5ab9d8b078710b63e67f88f4d174a984f7a8c1e8240bc16d7b722ccb99792
#13 5090.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:1ed5ab9d8b078710b63e67f88f4d174a984f7a8c1e8240bc16d7b722ccb99792?se=2021-05-04T10%3A00%3A00Z&sig=yHoo2ZbUJ5twttRJ5cK%2FBokD%2BKTR4GyWtXVVETjKNA0%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5117.4 Warning: Building lm-sensors from source as the bottle needs:
#13 5117.4 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5117.4 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5118.5 ==> Downloading https://github.com/lm-sensors/lm-sensors/archive/V3-6-0.tar.gz
#13 5118.5 ==> Downloading from https://codeload.github.com/lm-sensors/lm-sensors/tar.gz/V3-6-0
#13 5120.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxshmfence/manifests/1.3
#13 5122.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxshmfence/blobs/sha256:87492cc7c746c1c40962ce1d495c7f5e040b63202b07f01f3eff9b67f2f6575f
#13 5123.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:87492cc7c746c1c40962ce1d495c7f5e040b63202b07f01f3eff9b67f2f6575f?se=2021-05-04T10%3A00%3A00Z&sig=EFzCPSo22Kn%2FTq%2Foz4TmZDjVQ0%2FzlIxcH3MKH%2FhXXF4%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5123.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxv/manifests/1.0.11
#13 5125.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxv/blobs/sha256:770b614a7f743c967b71bec64febfe96d5b88333dc14ce6651ee7160e099aeaf
#13 5126.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:770b614a7f743c967b71bec64febfe96d5b88333dc14ce6651ee7160e099aeaf?se=2021-05-04T10%3A00%3A00Z&sig=gyN7Bm3CFMv1DIoPwGZL2EhVO6kCvnLqcedBwOZzz0o%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5127.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxvmc/manifests/1.0.12
#13 5129.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxvmc/blobs/sha256:ad779dd486d2436250d8e39f0abd8c713cced1e55f0ec905430573309c668459
#13 5130.0 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:ad779dd486d2436250d8e39f0abd8c713cced1e55f0ec905430573309c668459?se=2021-05-04T10%3A00%3A00Z&sig=uS1FObCQYYtgq4D1g6AyJLO9nhcJQfsDLlbClqvsz%2F4%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5130.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/docutils/manifests/0.17.1_1
#13 5132.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/docutils/blobs/sha256:9f46bdee85bcb11c10c0823dd9c0c113cbfa3dce54095a7d81b15e22248908a8
#13 5133.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:9f46bdee85bcb11c10c0823dd9c0c113cbfa3dce54095a7d81b15e22248908a8?se=2021-05-04T10%3A00%3A00Z&sig=KdxpR4Xv9qR4RZ2QlAp%2BQ3E%2FDnw1DtbAYRHVA1RYHVA%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5134.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpciaccess/manifests/0.16
#13 5136.3 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libpciaccess/blobs/sha256:0ad20571544fac268f42c3d5f4c0b3d35e3ad0024f29dabe18ddd24030a39567
#13 5137.2 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:0ad20571544fac268f42c3d5f4c0b3d35e3ad0024f29dabe18ddd24030a39567?se=2021-05-04T10%3A00%3A00Z&sig=RiD87KfRnQ5OFSdybjZfST2UT09i6ysaommUcJD0Fhc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5137.7 Warning: Building libdrm from source as the bottle needs:
#13 5137.7 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5137.7 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5138.2 ==> Downloading https://dri.freedesktop.org/libdrm/libdrm-2.4.105.tar.xz
#13 5139.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/wayland/manifests/1.19.0
#13 5141.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/wayland/blobs/sha256:0765a47f4771507aaf3e9ab2576dec6ceaecd1279ce5f03ae777617bd58dab84
#13 5142.0 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:0765a47f4771507aaf3e9ab2576dec6ceaecd1279ce5f03ae777617bd58dab84?se=2021-05-04T10%3A00%3A00Z&sig=BuBtgSVBag6T72NN7UExB%2F17TzfnXQ8JBqk5dTmvgeg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5142.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libva/manifests/2.11.0
#13 5144.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libva/blobs/sha256:0f4713fcf3b55cca8211b21e3ed38c2fd32b134a79fe2e5e1c03cdbac0f0b833
#13 5145.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:0f4713fcf3b55cca8211b21e3ed38c2fd32b134a79fe2e5e1c03cdbac0f0b833?se=2021-05-04T10%3A00%3A00Z&sig=Iol87mxYlFD4YOTAOL2gnbhM7kLFzuAWh0%2FgBi7rgPc%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5146.1 Warning: Building libvdpau from source as the bottle needs:
#13 5146.1 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5146.1 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5147.2 ==> Downloading https://gitlab.freedesktop.org/vdpau/libvdpau/-/archive/1.4/libvdpau-1.4.tar.bz2
#13 5149.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/wayland-protocols/manifests/1.20
#13 5151.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/wayland-protocols/blobs/sha256:64e9fc4ff59725f13c60644b9157d099d283eaedc35a451f2b5d6814a3cc9b3c
#13 5152.0 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:64e9fc4ff59725f13c60644b9157d099d283eaedc35a451f2b5d6814a3cc9b3c?se=2021-05-04T10%3A00%3A00Z&sig=E2qYP%2BC1Li8XOD91QSoTzDjuoMVf42xlqt3GdielID0%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5152.6 Warning: Building mesa from source as the bottle needs:
#13 5152.6 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5152.6 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5153.2 ==> Downloading https://gitlab.freedesktop.org/mesa/mesa/-/commit/50064ad367449afad03c927f7e572c138b05c5d4.diff
#13 5154.7 ==> Downloading https://files.pythonhosted.org/packages/5c/db/2d2d88b924aa4674a080aae83b59ea19d593250bfe5ed789947c21736785/Mako-1.1.4.tar.gz
#13 5156.0 ==> Downloading https://gitlab.freedesktop.org/mesa/demos/-/raw/faaa319d704ac677c3a93caadedeb91a4a74b7a7/src/xdemos/glxgears.c
#13 5157.7 ==> Downloading https://gitlab.freedesktop.org/mesa/demos/-/raw/faaa319d704ac677c3a93caadedeb91a4a74b7a7/src/util/gl_wrap.h
#13 5159.3 ==> Downloading https://archive.mesa3d.org/mesa-21.0.3.tar.xz
#13 5162.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mesa-glu/manifests/9.0.1
#13 5164.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/mesa-glu/blobs/sha256:cc6c07a0fec48dbaf44144916637188e1ebdc65bfdbb0da37652bca7873c728d
#13 5164.9 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:cc6c07a0fec48dbaf44144916637188e1ebdc65bfdbb0da37652bca7873c728d?se=2021-05-04T10%3A00%3A00Z&sig=dLarMmO8y7VC%2BjxLIbjRZgb3KWQ3x8yKWBNYUozJIns%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5165.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxinerama/manifests/1.1.4
#13 5167.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/libxinerama/blobs/sha256:06134907802d953c75bc8740121fb3ad2345e1b33d55370d09b2c92e2465f96c
#13 5168.4 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:06134907802d953c75bc8740121fb3ad2345e1b33d55370d09b2c92e2465f96c?se=2021-05-04T10%3A00%3A00Z&sig=dtyOlXf9Wg9qdrigfov0%2BaPycNXKkHuhbFsptsUdwc0%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5168.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xinput/manifests/1.6.3
#13 5170.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/xinput/blobs/sha256:ac47ac3323aba9cb56483f6db789e79ec1bcbc10970995340ec6c0ffc9fc5c0e
#13 5171.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:ac47ac3323aba9cb56483f6db789e79ec1bcbc10970995340ec6c0ffc9fc5c0e?se=2021-05-04T10%3A00%3A00Z&sig=tX6HDcEGgVyn49ZDZ9H3cEX3ozhEHK31d7L%2Fveaey2A%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5172.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/freeglut/manifests/3.2.1_5
#13 5174.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/freeglut/blobs/sha256:40609b9b33b567b90eb41ce2a5e8f5bb91937c357025e0c391f9478f0e3db4e5
#13 5175.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:40609b9b33b567b90eb41ce2a5e8f5bb91937c357025e0c391f9478f0e3db4e5?se=2021-05-04T10%3A00%3A00Z&sig=NtRig5VS%2Fax2D%2Ff9ALm0ZeSgNYBop2437KdcTrn8T%2FU%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5175.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jasper/manifests/2.0.32
#13 5177.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/jasper/blobs/sha256:5fdd7e27b141af3cb1766121c12ae22cdd86fe7851f59ef633be45605ca82041
#13 5178.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:5fdd7e27b141af3cb1766121c12ae22cdd86fe7851f59ef633be45605ca82041?se=2021-05-04T10%3A00%3A00Z&sig=UG65ZUqDhRP42j4HA1a5VxpFR3psQpHBGkz6uudZKdI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5179.5 ==> Downloading https://ghcr.io/v2/linuxbrew/core/netpbm/manifests/10.86.21
#13 5181.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/netpbm/blobs/sha256:49aa89662fc30e78fc8628b87a21de2599a2748798dabe2800d97dfbf21549d2
#13 5182.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:49aa89662fc30e78fc8628b87a21de2599a2748798dabe2800d97dfbf21549d2?se=2021-05-04T10%3A00%3A00Z&sig=Pv2oC4eEhRGqPEJof2A98S9LcRfEXC%2F1hh2wPkcQeRg%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5184.0 ==> Downloading https://ghcr.io/v2/linuxbrew/core/psutils/manifests/p17-1
#13 5185.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/psutils/blobs/sha256:096cf231524d69e34b00382a617d3269e86926c78b8071752a568031b91a3258
#13 5186.7 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:096cf231524d69e34b00382a617d3269e86926c78b8071752a568031b91a3258?se=2021-05-04T10%3A00%3A00Z&sig=Pb7hNIYeMzZzXnrb7J%2F%2FIxB5UY%2BTLGfiQK0aFpsnCrE%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5187.2 ==> Downloading https://ghcr.io/v2/linuxbrew/core/uchardet/manifests/0.0.7
#13 5189.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/uchardet/blobs/sha256:6d5d176e4f2caae139d5f42376a08da54913f4018f26504267677f6ab319b641
#13 5190.1 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:6d5d176e4f2caae139d5f42376a08da54913f4018f26504267677f6ab319b641?se=2021-05-04T10%3A00%3A00Z&sig=tUMUwwOfHyTZF7P00gIqM0tKfQ2Veuu2CsA%2BZeO8FMI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5190.7 ==> Downloading https://ghcr.io/v2/linuxbrew/core/pcre/manifests/8.44
#13 5192.6 ==> Downloading https://ghcr.io/v2/linuxbrew/core/pcre/blobs/sha256:e09f36059975d108b0e42fa9d69b9ed25bc81bc25371dcee58134ad7416a6a61
#13 5193.5 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:e09f36059975d108b0e42fa9d69b9ed25bc81bc25371dcee58134ad7416a6a61?se=2021-05-04T10%3A00%3A00Z&sig=FNnSv%2FMiBPS0y4aSGiX8tADTpDjFfRS7HQnoZl2pFKI%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5194.4 Warning: Building glib from source as the bottle needs:
#13 5194.4 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5194.4 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5194.8 ==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/43467fd8dfc0e8954892ecc08fab131242dca025/glib/hardcoded-paths.diff
#13 5197.3 ==> Downloading https://download.gnome.org/sources/glib/2.68/glib-2.68.1.tar.xz
#13 5197.3 ==> Downloading from https://mirror.umd.edu/gnome/sources/glib/2.68/glib-2.68.1.tar.xz
#13 5199.7 Warning: Building groff from source as the bottle needs:
#13 5199.7 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5199.7 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5200.1 ==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/8059b3027a4aa68d8f42e1281cc3a81449ca0010/groff/1.22.4.patch
#13 5201.2 ==> Downloading https://ftp.gnu.org/gnu/groff/groff-1.22.4.tar.gz
#13 5204.4 Warning: Building openldap from source as the bottle needs:
#13 5204.4 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5204.4 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5205.0 ==> Downloading https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.4.58.tgz
#13 5207.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/rtmpdump/manifests/2.4.20151223_1
#13 5209.4 ==> Downloading https://ghcr.io/v2/linuxbrew/core/rtmpdump/blobs/sha256:422733ec0ea4c3884b781346333c9292c3042da1a36ae589f2ef680cb66458bd
#13 5210.3 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:422733ec0ea4c3884b781346333c9292c3042da1a36ae589f2ef680cb66458bd?se=2021-05-04T10%3A00%3A00Z&sig=275wPfBkXBLsKiV%2Fm5Mg%2FQAaEdJon%2FL7USG9LUcgtGA%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5210.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/zstd/manifests/1.4.9_1
#13 5212.8 ==> Downloading https://ghcr.io/v2/linuxbrew/core/zstd/blobs/sha256:e6e1e6bbe270f2d462866bf42750538766b8b73bc2050c051d4433f9764698e2
#13 5213.6 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:e6e1e6bbe270f2d462866bf42750538766b8b73bc2050c051d4433f9764698e2?se=2021-05-04T10%3A00%3A00Z&sig=3rsyxBgDT5XwWeCjKh7Vi6e7neKEJy%2FoTTBoT0Gvu%2F0%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5214.5 Warning: Building krb5 from source as the bottle needs:
#13 5214.5 - HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar (yours is /opt/octopus/build/brew/Cellar)
#13 5214.5 - HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew (yours is /opt/octopus/build/brew)
#13 5215.4 ==> Downloading https://kerberos.org/dist/krb5/1.19/krb5-1.19.1.tar.gz
#13 5219.1 ==> Downloading https://ghcr.io/v2/linuxbrew/core/curl/manifests/7.76.1_1
#13 5220.9 ==> Downloading https://ghcr.io/v2/linuxbrew/core/curl/blobs/sha256:a477edaef9698293f0f7662be0bdfe59de1a2455ff72ffb538cef9fa4711fe9f
#13 5221.8 ==> Downloading from https://pkg-containers-az.githubusercontent.com/ghcr1/blobs/sha256:a477edaef9698293f0f7662be0bdfe59de1a2455ff72ffb538cef9fa4711fe9f?se=2021-05-04T10%3A00%3A00Z&sig=hPE19i01iu4LMXuo%2F9F5KdngdU4umA%2BlTZqdZa7kRxw%3D&sp=r&spr=https&sr=b&sv=2019-12-12
#13 5223.6 ==> Downloading https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz2
#13 5223.6 ==> Downloading from https://github-releases.githubusercontent.com/4339773/17dfdd00-8707-11eb-9381-2f431cf5b316?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210504%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210504T095405Z&X-Amz-Expires=300&X-Amz-Signature=4ba73b72e35ef9780c4dec0277f765fb914549c49451f19d660f39ca26e424d3&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=4339773&response-content-disposition=attachment%3B%20filename%3Dhtslib-1.12.tar.bz2&response-content-type=application%2Foctet-stream
#13 5224.8 ==> Installing dependencies for htslib: xz, brotli, readline, libxml2, gettext, libunistring, libidn2, expat, libmetalink, libssh2, c-ares, jemalloc, libev, nghttp2, berkeley-db, gdbm, perl, texinfo, jpeg, libtiff, libpng, freetype, gperf, json-c, util-linux, fontconfig, libidn, ghostscript, util-macros, xtrans, libpthread-stubs, xorgproto, libxau, libxdmcp, libxcb, libx11, libxext, libxfixes, libxi, libxrender, libxrandr, libxxf86vm, mpdecimal, sqlite, libffi, unzip, python@3.9, ninja, meson, libxdamage, m4, bison, help2man, flex, libedit, libelf, llvm, lm-sensors, libxshmfence, libxv, libxvmc, docutils, libpciaccess, libdrm, wayland, libva, libvdpau, wayland-protocols, mesa, mesa-glu, libxinerama, xinput, freeglut, jasper, netpbm, psutils, uchardet, pcre, glib, groff, openldap, rtmpdump, zstd, krb5 and curl
#13 5224.8 ==> Installing htslib dependency: xz
#13 5224.8 ==> Pouring xz--5.2.5.x86_64_linux.bottle.tar.gz
#13 5226.7 🍺  /opt/octopus/build/brew/Cellar/xz/5.2.5: 128 files, 1.8MB
#13 5226.7 ==> Installing htslib dependency: brotli
#13 5226.7 ==> Pouring brotli--1.0.9.x86_64_linux.bottle.tar.gz
#13 5228.3 🍺  /opt/octopus/build/brew/Cellar/brotli/1.0.9: 25 files, 2.5MB
#13 5228.3 ==> Installing htslib dependency: readline
#13 5228.3 ==> Pouring readline--8.1.x86_64_linux.bottle.tar.gz
#13 5229.8 🍺  /opt/octopus/build/brew/Cellar/readline/8.1: 48 files, 2.0MB
#13 5229.8 ==> Installing htslib dependency: libxml2
#13 5229.8 ==> Pouring libxml2--2.9.10_2.x86_64_linux.bottle.tar.gz
#13 5231.7 🍺  /opt/octopus/build/brew/Cellar/libxml2/2.9.10_2: 281 files, 12.5MB
#13 5231.7 ==> Installing htslib dependency: gettext
#13 5235.1 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/gettext/0.21_2 --with-included-glib --with-included-libcroco --with-included-libunistring --with-included-libxml --with-emacs --with-lispdir=/opt/octopus/build/brew/Cellar/gettext/0.21_2/share/emacs/site-lisp/gettext --disable-java --disable-csharp --without-git --without-cvs --without-xz --with-libxml2-prefix=/opt/octopus/build/brew/opt/libxml2
#13 5367.2 ==> make
#13 5573.2 ==> make install
#13 5597.4 🍺  /opt/octopus/build/brew/Cellar/gettext/0.21_2: 1,952 files, 21.5MB, built in 6 minutes 5 seconds
#13 5597.4 ==> Installing htslib dependency: libunistring
#13 5597.4 ==> Pouring libunistring--0.9.10.x86_64_linux.bottle.tar.gz
#13 5598.9 🍺  /opt/octopus/build/brew/Cellar/libunistring/0.9.10: 55 files, 10.1MB
#13 5598.9 ==> Installing htslib dependency: libidn2
#13 5600.6 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/libidn2/2.3.0_1 --with-libintl-prefix=/opt/octopus/build/brew/opt/gettext --with-packager=Homebrew
#13 5625.5 ==> make install
#13 5632.4 🍺  /opt/octopus/build/brew/Cellar/libidn2/2.3.0_1: 73 files, 990KB, built in 33 seconds
#13 5632.4 ==> Installing htslib dependency: expat
#13 5632.4 ==> Pouring expat--2.3.0.x86_64_linux.bottle.tar.gz
#13 5633.9 🍺  /opt/octopus/build/brew/Cellar/expat/2.3.0: 21 files, 773.8KB
#13 5633.9 ==> Installing htslib dependency: libmetalink
#13 5633.9 ==> Pouring libmetalink--0.1.3.x86_64_linux.bottle.tar.gz
#13 5635.5 🍺  /opt/octopus/build/brew/Cellar/libmetalink/0.1.3: 31 files, 265KB
#13 5635.5 ==> Installing htslib dependency: libssh2
#13 5635.5 ==> Pouring libssh2--1.9.0_1.x86_64_linux.bottle.tar.gz
#13 5637.2 🍺  /opt/octopus/build/brew/Cellar/libssh2/1.9.0_1: 186 files, 1.2MB
#13 5637.2 ==> Installing htslib dependency: c-ares
#13 5637.2 ==> Pouring c-ares--1.17.1.x86_64_linux.bottle.tar.gz
#13 5638.9 🍺  /opt/octopus/build/brew/Cellar/c-ares/1.17.1: 85 files, 628KB
#13 5638.9 ==> Installing htslib dependency: jemalloc
#13 5638.9 ==> Pouring jemalloc--5.2.1_1.x86_64_linux.bottle.tar.gz
#13 5640.4 🍺  /opt/octopus/build/brew/Cellar/jemalloc/5.2.1_1: 18 files, 3MB
#13 5640.4 ==> Installing htslib dependency: libev
#13 5640.4 ==> Pouring libev--4.33.x86_64_linux.bottle.tar.gz
#13 5641.9 🍺  /opt/octopus/build/brew/Cellar/libev/4.33: 14 files, 548KB
#13 5641.9 ==> Installing htslib dependency: nghttp2
#13 5643.7 ==> Patching
#13 5643.7 ==> Applying 829258e7038fe7eff849677f1ccaeca3e704eb67.patch
#13 5643.7 patching file src/shrpx_api_downstream_connection.cc
#13 5643.7 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/nghttp2/1.43.0 --enable-app --disable-examples --disable-hpack-tools --disable-python-bindings --without-systemd
#13 5660.7 ==> make
#13 5717.8 ==> make install
#13 5720.2 🍺  /opt/octopus/build/brew/Cellar/nghttp2/1.43.0: 24 files, 3MB, built in 1 minute 18 seconds
#13 5720.2 ==> Installing htslib dependency: berkeley-db
#13 5720.2 ==> Pouring berkeley-db--18.1.40.x86_64_linux.bottle.tar.gz
#13 5723.0 🍺  /opt/octopus/build/brew/Cellar/berkeley-db/18.1.40: 44 files, 8MB
#13 5723.0 ==> Installing htslib dependency: gdbm
#13 5724.1 ==> ./configure --enable-libgdbm-compat --without-readline --prefix=/opt/octopus/build/brew/Cellar/gdbm/1.19
#13 5730.4 ==> make install
#13 5739.5 🍺  /opt/octopus/build/brew/Cellar/gdbm/1.19: 40 files, 1.1MB, built in 16 seconds
#13 5739.5 ==> Installing htslib dependency: perl
#13 5743.5 ==> ./Configure -des -Dprefix=/opt/octopus/build/brew/Cellar/perl/5.32.1_1 -Dprivlib=/opt/octopus/build/brew/Cellar/perl/5.32.1_1/lib/perl5/5.32.1 -Dsitelib=/opt/octopus/build/brew/Cellar/perl/5.32.1_1/lib/perl5/site_perl/5.32.1 -Dotherlibdirs=/opt/octopus/build/brew/lib/perl5/site_perl/5.32.1 -Dperlpath=/opt/octopus/build/brew/opt/perl/bin/perl -Dstartperl=#!/opt/octopus/build/brew/opt/perl/bin/perl -Dman1dir=/opt/octopus/build/brew/Cellar/perl/5.32.1_1/share/man/man1 -Dman3dir=/opt/octopus/build/brew/Cellar/perl/5.32.1_1/share/man/man3 -Duseshrplib -Duselargefiles -Dusethreads
#13 5841.1 ==> make
#13 5961.0 ==> make install
#13 6003.8 ==> Caveats
#13 6003.8 By default non-brewed cpan modules are installed to the Cellar. If you wish
#13 6003.8 for your modules to persist across updates we recommend using `local::lib`.
#13 6003.8
#13 6003.8 You can set that up like this:
#13 6003.8   PERL_MM_OPT="INSTALL_BASE=$HOME/perl5" cpan local::lib
#13 6003.8   echo 'eval "$(perl -I$HOME/perl5/lib/perl5 -Mlocal::lib=$HOME/perl5)"' >> ~/.profile
#13 6003.8 ==> Summary
#13 6003.8 🍺  /opt/octopus/build/brew/Cellar/perl/5.32.1_1: 2,471 files, 71.6MB, built in 4 minutes 24 seconds
#13 6003.8 ==> Installing htslib dependency: texinfo
#13 6006.6 ==> ./configure --disable-install-warnings --prefix=/opt/octopus/build/brew/Cellar/texinfo/6.7_2
#13 6034.6 ==> make install
#13 6056.5 🍺  /opt/octopus/build/brew/Cellar/texinfo/6.7_2: 458 files, 10.3MB, built in 52 seconds
#13 6056.5 ==> Installing htslib dependency: jpeg
#13 6056.5 ==> Pouring jpeg--9d.x86_64_linux.bottle.tar.gz
#13 6058.3 🍺  /opt/octopus/build/brew/Cellar/jpeg/9d: 23 files, 958KB
#13 6058.3 ==> Installing htslib dependency: libtiff
#13 6058.3 ==> Pouring libtiff--4.3.0.x86_64_linux.bottle.tar.gz
#13 6061.1 🍺  /opt/octopus/build/brew/Cellar/libtiff/4.3.0: 251 files, 4.2MB
#13 6061.1 ==> Installing htslib dependency: libpng
#13 6061.1 ==> Pouring libpng--1.6.37.x86_64_linux.bottle.tar.gz
#13 6062.7 🍺  /opt/octopus/build/brew/Cellar/libpng/1.6.37: 29 files, 1.4MB
#13 6062.7 ==> Installing htslib dependency: freetype
#13 6062.7 ==> Pouring freetype--2.10.4.x86_64_linux.bottle.tar.gz
#13 6064.2 🍺  /opt/octopus/build/brew/Cellar/freetype/2.10.4: 65 files, 2.7MB
#13 6064.2 ==> Installing htslib dependency: gperf
#13 6064.2 ==> Pouring gperf--3.1.x86_64_linux.bottle.tar.gz
#13 6065.6 🍺  /opt/octopus/build/brew/Cellar/gperf/3.1: 11 files, 843KB
#13 6065.6 ==> Installing htslib dependency: json-c
#13 6065.6 ==> Pouring json-c--0.15.x86_64_linux.bottle.tar.gz
#13 6067.2 🍺  /opt/octopus/build/brew/Cellar/json-c/0.15: 32 files, 416.0KB
#13 6067.2 ==> Installing htslib dependency: util-linux
#13 6069.7 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/util-linux/2.36.2 --disable-use-tty-group --disable-kill --disable-cal --without-systemd --with-bashcompletiondir=/opt/octopus/build/brew/Cellar/util-linux/2.36.2/etc/bash_completion.d --disable-chfn-chsh --disable-login --disable-su --disable-runuser --disable-makeinstall-chown --disable-makeinstall-setuid --without-python
#13 6094.1 ==> make install
#13 6170.7 ==> Caveats
#13 6170.7 Bash completion has been installed to:
#13 6170.7   /opt/octopus/build/brew/etc/bash_completion.d
#13 6170.7 ==> Summary
#13 6170.7 🍺  /opt/octopus/build/brew/Cellar/util-linux/2.36.2: 398 files, 19.2MB, built in 1 minute 43 seconds
#13 6170.7 ==> Installing htslib dependency: fontconfig
#13 6172.3 ==> Patching
#13 6172.3 ==> Applying 6def66164a36eed968aae872d76acfac3173d44a.patch
#13 6172.3 patching file src/fcatomic.h
#13 6172.3 ==> ./configure --enable-static --with-add-fonts=/System/Library/Fonts,/Library/Fonts,~/Library/Fonts --prefix=/opt/octopus/build/brew/Cellar/fontconfig/2.13.1_1 --localstatedir=/opt/octopus/build/brew/var --sysconfdir=/opt/octopus/build/brew/etc
#13 6183.2 ==> make install RUN_FC_CACHE_TEST=false
#13 6201.5 ==> Regenerating font cache, this may take a while
#13 6201.5 ==> /opt/octopus/build/brew/Cellar/fontconfig/2.13.1_1/bin/fc-cache -frv
#13 6201.9 🍺  /opt/octopus/build/brew/Cellar/fontconfig/2.13.1_1: 514 files, 3.6MB, built in 31 seconds
#13 6201.9 ==> Installing htslib dependency: libidn
#13 6201.9 ==> Pouring libidn--1.36.x86_64_linux.bottle.tar.gz
#13 6203.8 ==> Caveats
#13 6203.8 Emacs Lisp files have been installed to:
#13 6203.8   /opt/octopus/build/brew/share/emacs/site-lisp/libidn
#13 6203.8 ==> Summary
#13 6203.8 🍺  /opt/octopus/build/brew/Cellar/libidn/1.36: 96 files, 1.9MB
#13 6203.8 ==> Installing htslib dependency: ghostscript
#13 6207.7 ==> Patching
#13 6207.7 ==> Applying config.patch
#13 6207.7 patching file config.guess
#13 6207.7 patching file config.sub
#13 6207.7 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/ghostscript/9.53.3_1 --disable-cups --disable-compile-inits --disable-gtk --disable-fontconfig --without-libidn --without-x
#13 6232.7 ==> make install
#13 6546.0 ==> make install-so
#13 6860.7 🍺  /opt/octopus/build/brew/Cellar/ghostscript/9.53.3_1: 668 files, 96.6MB, built in 10 minutes 56 seconds
#13 6860.7 ==> Installing htslib dependency: util-macros
#13 6860.7 ==> Pouring util-macros--1.19.3.x86_64_linux.bottle.tar.gz
#13 6861.9 🍺  /opt/octopus/build/brew/Cellar/util-macros/1.19.3: 8 files, 193.6KB
#13 6861.9 ==> Installing htslib dependency: xtrans
#13 6861.9 ==> Pouring xtrans--1.4.0.x86_64_linux.bottle.tar.gz
#13 6863.3 🍺  /opt/octopus/build/brew/Cellar/xtrans/1.4.0: 15 files, 316KB
#13 6863.3 ==> Installing htslib dependency: libpthread-stubs
#13 6863.3 ==> Pouring libpthread-stubs--0.4.x86_64_linux.bottle.tar.gz
#13 6864.6 🍺  /opt/octopus/build/brew/Cellar/libpthread-stubs/0.4: 5 files, 22.3KB
#13 6864.6 ==> Installing htslib dependency: xorgproto
#13 6864.6 ==> Pouring xorgproto--2021.4.x86_64_linux.bottle.tar.gz
#13 6866.1 🍺  /opt/octopus/build/brew/Cellar/xorgproto/2021.4: 264 files, 4.0MB
#13 6866.1 ==> Installing htslib dependency: libxau
#13 6866.1 ==> Pouring libxau--1.0.9.x86_64_linux.bottle.tar.gz
#13 6867.6 🍺  /opt/octopus/build/brew/Cellar/libxau/1.0.9: 21 files, 131.8KB
#13 6867.6 ==> Installing htslib dependency: libxdmcp
#13 6867.6 ==> Pouring libxdmcp--1.1.3.x86_64_linux.bottle.tar.gz
#13 6869.0 🍺  /opt/octopus/build/brew/Cellar/libxdmcp/1.1.3: 12 files, 136.0KB
#13 6869.0 ==> Installing htslib dependency: libxcb
#13 6869.0 ==> Pouring libxcb--1.14_1.x86_64_linux.bottle.1.tar.gz
#13 6874.5 🍺  /opt/octopus/build/brew/Cellar/libxcb/1.14_1: 2,452 files, 6.7MB
#13 6874.5 ==> Installing htslib dependency: libx11
#13 6876.5 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/libx11/1.7.0 --sysconfdir=/opt/octopus/build/brew/etc --localstatedir=/opt/octopus/build/brew/var --enable-unix-transport --enable-tcp-transport --enable-ipv6 --enable-local-transport --enable-loadable-i18n --enable-xthreads --enable-specs=no
#13 6887.1 ==> make
#13 6939.4 ==> make install
#13 6945.6 🍺  /opt/octopus/build/brew/Cellar/libx11/1.7.0: 1,062 files, 7.9MB, built in 1 minute 10 seconds
#13 6945.6 ==> Installing htslib dependency: libxext
#13 6945.6 ==> Pouring libxext--1.3.4.x86_64_linux.bottle.tar.gz
#13 6947.3 🍺  /opt/octopus/build/brew/Cellar/libxext/1.3.4: 88 files, 488.4KB
#13 6947.3 ==> Installing htslib dependency: libxfixes
#13 6947.3 ==> Pouring libxfixes--5.0.3.x86_64_linux.bottle.tar.gz
#13 6948.8 🍺  /opt/octopus/build/brew/Cellar/libxfixes/5.0.3: 13 files, 136.5KB
#13 6948.8 ==> Installing htslib dependency: libxi
#13 6948.8 ==> Pouring libxi--1.7.10.x86_64_linux.bottle.tar.gz
#13 6950.3 🍺  /opt/octopus/build/brew/Cellar/libxi/1.7.10: 85 files, 744KB
#13 6950.3 ==> Installing htslib dependency: libxrender
#13 6950.3 ==> Pouring libxrender--0.9.10.x86_64_linux.bottle.tar.gz
#13 6951.8 🍺  /opt/octopus/build/brew/Cellar/libxrender/0.9.10: 13 files, 209.6KB
#13 6951.8 ==> Installing htslib dependency: libxrandr
#13 6951.8 ==> Pouring libxrandr--1.5.2.x86_64_linux.bottle.tar.gz
#13 6953.6 🍺  /opt/octopus/build/brew/Cellar/libxrandr/1.5.2: 27 files, 247.4KB
#13 6953.6 ==> Installing htslib dependency: libxxf86vm
#13 6953.6 ==> Pouring libxxf86vm--1.1.4.x86_64_linux.bottle.tar.gz
#13 6955.2 🍺  /opt/octopus/build/brew/Cellar/libxxf86vm/1.1.4: 34 files, 142.5KB
#13 6955.2 ==> Installing htslib dependency: mpdecimal
#13 6955.2 ==> Pouring mpdecimal--2.5.1.x86_64_linux.bottle.tar.gz
#13 6956.8 🍺  /opt/octopus/build/brew/Cellar/mpdecimal/2.5.1: 71 files, 2.4MB
#13 6956.8 ==> Installing htslib dependency: sqlite
#13 6956.8 ==> Pouring sqlite--3.35.5.x86_64_linux.bottle.tar.gz
#13 6958.5 🍺  /opt/octopus/build/brew/Cellar/sqlite/3.35.5: 12 files, 5MB
#13 6958.5 ==> Installing htslib dependency: libffi
#13 6958.5 ==> Pouring libffi--3.3_4.x86_64_linux.bottle.tar.gz
#13 6960.1 🍺  /opt/octopus/build/brew/Cellar/libffi/3.3_4: 18 files, 571.6KB
#13 6960.1 ==> Installing htslib dependency: unzip
#13 6960.1 ==> Pouring unzip--6.0_7.x86_64_linux.bottle.tar.gz
#13 6961.8 🍺  /opt/octopus/build/brew/Cellar/unzip/6.0_7: 16 files, 576.4KB
#13 6961.8 ==> Installing htslib dependency: python@3.9
#13 6965.8 ==> Patching
#13 6965.8 ==> Applying decimal.diff
#13 6965.8 patching file Modules/_decimal/_decimal.c
#13 6965.8 patching file setup.py
#13 6965.8 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4 --enable-ipv6 --datarootdir=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4/share --datadir=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4/share --without-ensurepip --enable-loadable-sqlite-extensions --with-openssl=/opt/octopus/build/brew/opt/openssl@1.1 --with-dbmliborder=gdbm:ndbm --enable-optimizations --with-lto --with-system-expat --with-system-ffi --with-system-libmpdec --enable-shared MACOSX_DEPLOYMENT_TARGET= CFLAGS_NODIST=-I/opt/octopus/build/brew/include LDFLAGS_NODIST=-L/opt/octopus/build/brew/lib CPPFLAGS=-I/opt/octopus/build/brew/include
#13 7011.8 ==> make
#13 7648.7 ==> make install PYTHONAPPSDIR=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4
#13 7664.7 ==> /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/bin/python3 -m venv /tmp/pythonA3.9-20210504-304-sh1hjs/Python-3.9.4/whl_build
#13 7667.8 ==> /tmp/pythonA3.9-20210504-304-sh1hjs/Python-3.9.4/whl_build/bin/pip3 install -v --no-deps --no-binary :all: --no-index --no-build-isolation .
#13 7668.9 ==> /tmp/pythonA3.9-20210504-304-sh1hjs/Python-3.9.4/whl_build/bin/pip3 wheel -v --no-deps --no-binary :all: --no-index --no-build-isolation --wheel-dir=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4/libexec .
#13 7670.2 ==> /tmp/pythonA3.9-20210504-304-sh1hjs/Python-3.9.4/whl_build/bin/pip3 wheel -v --no-deps --no-binary :all: --no-index --no-build-isolation --wheel-dir=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4/lib/python3.9/ensurepip/_bundled .
#13 7672.1 ==> /tmp/pythonA3.9-20210504-304-sh1hjs/Python-3.9.4/whl_build/bin/pip3 wheel -v --no-deps --no-binary :all: --no-index --no-build-isolation --wheel-dir=/opt/octopus/build/brew/Cellar/python@3.9/3.9.4/lib/python3.9/ensurepip/_bundled .
#13 7688.9 ==> /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/bin/python3 -m ensurepip
#13 7692.2 ==> /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/bin/python3 -m pip install -v --no-deps --no-index --upgrade --isolated --target=/opt/octopus/build/brew/lib/python3.9/site-packages /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/lib/python3.9/ensurepip/_bundled/setuptools-54.2.0-py3-none-any.whl /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/lib/python3.9/ensurepip/_bundled/pip-21.0.1-py3-none-any.whl /opt/octopus/build/brew/Cellar/python@3.9/3.9.4/libexec/wheel-0.36.2-py2.py3-none-any.whl
#13 7697.1 ==> Caveats
#13 7697.1 Python has been installed as
#13 7697.1   /opt/octopus/build/brew/bin/python3
#13 7697.1
#13 7697.1 Unversioned symlinks `python`, `python-config`, `pip` etc. pointing to
#13 7697.1 `python3`, `python3-config`, `pip3` etc., respectively, have been installed into
#13 7697.1   /opt/octopus/build/brew/opt/python@3.9/libexec/bin
#13 7697.1
#13 7697.1 You can install Python packages with
#13 7697.1   pip3 install <package>
#13 7697.1 They will install into the site-package directory
#13 7697.1   /opt/octopus/build/brew/lib/python3.9/site-packages
#13 7697.1
#13 7697.1 tkinter is no longer included with this formula, but it is available separately:
#13 7697.1   brew install python-tk@3.9
#13 7697.1
#13 7697.1 See: https://docs.brew.sh/Homebrew-and-Python
#13 7697.1 ==> Summary
#13 7697.1 🍺  /opt/octopus/build/brew/Cellar/python@3.9/3.9.4: 7,403 files, 138.0MB, built in 12 minutes 15 seconds
#13 7697.1 ==> Installing htslib dependency: ninja
#13 7698.3 ==> /opt/octopus/build/brew/opt/python@3.9/bin/python3 ./configure.py --bootstrap --verbose --with-python=/opt/octopus/build/brew/opt/python@3.9/bin/python3
#13 7742.0 ==> Caveats
#13 7742.0 Bash completion has been installed to:
#13 7742.0   /opt/octopus/build/brew/etc/bash_completion.d
#13 7742.0 ==> Summary
#13 7742.0 🍺  /opt/octopus/build/brew/Cellar/ninja/1.10.2: 7 files, 6.9MB, built in 44 seconds
#13 7742.0 ==> Installing htslib dependency: meson
#13 7742.0 ==> Pouring meson--0.58.0.x86_64_linux.bottle.tar.gz
#13 7743.6 🍺  /opt/octopus/build/brew/Cellar/meson/0.58.0: 181 files, 3MB
#13 7743.6 ==> Installing htslib dependency: libxdamage
#13 7743.6 ==> Pouring libxdamage--1.1.5.x86_64_linux.bottle.tar.gz
#13 7745.0 🍺  /opt/octopus/build/brew/Cellar/libxdamage/1.1.5: 13 files, 78KB
#13 7745.0 ==> Installing htslib dependency: m4
#13 7745.0 ==> Pouring m4--1.4.18.x86_64_linux.bottle.1.tar.gz
#13 7746.5 🍺  /opt/octopus/build/brew/Cellar/m4/1.4.18: 13 files, 638KB
#13 7746.5 ==> Installing htslib dependency: bison
#13 7748.1 ==> ./configure --enable-relocatable --prefix=/output
#13 7792.7 ==> make install DESTDIR=/tmp/bison-20210504-16613-i29f16/bison-3.7.6
#13 7803.8 🍺  /opt/octopus/build/brew/Cellar/bison/3.7.6: 203 files, 4.6MB, built in 57 seconds
#13 7803.8 ==> Installing htslib dependency: help2man
#13 7803.8 ==> Pouring help2man--1.48.3.x86_64_linux.bottle.tar.gz
#13 7805.6 🍺  /opt/octopus/build/brew/Cellar/help2man/1.48.3: 67 files, 1MB
#13 7805.6 ==> Installing htslib dependency: flex
#13 7806.9 ==> ./configure --enable-shared --prefix=/opt/octopus/build/brew/Cellar/flex/2.6.4_2
#13 7816.3 ==> make install
#13 7824.8 🍺  /opt/octopus/build/brew/Cellar/flex/2.6.4_2: 47 files, 1.7MB, built in 19 seconds
#13 7824.8 ==> Installing htslib dependency: libedit
#13 7824.8 ==> Pouring libedit--20210419-3.1.x86_64_linux.bottle.tar.gz
#13 7826.5 🍺  /opt/octopus/build/brew/Cellar/libedit/20210419-3.1: 54 files, 760.0KB
#13 7826.5 ==> Installing htslib dependency: libelf
#13 7826.5 ==> Pouring libelf--0.8.13_1.x86_64_linux.bottle.tar.gz
#13 7828.2 🍺  /opt/octopus/build/brew/Cellar/libelf/0.8.13_1: 14 files, 409KB
#13 7828.2 ==> Installing htslib dependency: llvm
#13 7828.2 ==> Pouring llvm--12.0.0.x86_64_linux.bottle.1.tar.gz
#13 7885.5 ==> Caveats
#13 7885.5 To use the bundled libc++ please add the following LDFLAGS:
#13 7885.5   LDFLAGS="-L/opt/octopus/build/brew/opt/llvm/lib -Wl,-rpath,/opt/octopus/build/brew/opt/llvm/lib"
#13 7885.5
#13 7885.5 Emacs Lisp files have been installed to:
#13 7885.5   /opt/octopus/build/brew/share/emacs/site-lisp/llvm
#13 7885.5 ==> Summary
#13 7885.5 🍺  /opt/octopus/build/brew/Cellar/llvm/12.0.0: 4,765 files, 1.2GB
#13 7885.5 ==> Installing htslib dependency: lm-sensors
#13 7886.7 ==> make PREFIX=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0 BUILD_STATIC_LIB=0 MANDIR=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0/share/man ETCDIR=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0/etc
#13 7888.6 ==> make PREFIX=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0 BUILD_STATIC_LIB=0 MANDIR=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0/share/man ETCDIR=/opt/octopus/build/brew/Cellar/lm-sensors/3.6.0/etc install
#13 7890.5 🍺  /opt/octopus/build/brew/Cellar/lm-sensors/3.6.0: 29 files, 612.8KB, built in 4 seconds
#13 7890.5 ==> Installing htslib dependency: libxshmfence
#13 7890.5 ==> Pouring libxshmfence--1.3.x86_64_linux.bottle.tar.gz
#13 7892.0 🍺  /opt/octopus/build/brew/Cellar/libxshmfence/1.3: 11 files, 62.2KB
#13 7892.0 ==> Installing htslib dependency: libxv
#13 7892.0 ==> Pouring libxv--1.0.11.x86_64_linux.bottle.tar.gz
#13 7893.7 🍺  /opt/octopus/build/brew/Cellar/libxv/1.0.11: 38 files, 192.6KB
#13 7893.7 ==> Installing htslib dependency: libxvmc
#13 7893.7 ==> Pouring libxvmc--1.0.12.x86_64_linux.bottle.tar.gz
#13 7895.4 🍺  /opt/octopus/build/brew/Cellar/libxvmc/1.0.12: 18 files, 214.8KB
#13 7895.4 ==> Installing htslib dependency: docutils
#13 7895.4 ==> Pouring docutils--0.17.1_1.x86_64_linux.bottle.tar.gz
#13 7897.6 🍺  /opt/octopus/build/brew/Cellar/docutils/0.17.1_1: 798 files, 10MB
#13 7897.6 ==> Installing htslib dependency: libpciaccess
#13 7897.6 ==> Pouring libpciaccess--0.16.x86_64_linux.bottle.tar.gz
#13 7899.3 🍺  /opt/octopus/build/brew/Cellar/libpciaccess/0.16: 12 files, 261KB
#13 7899.3 ==> Installing htslib dependency: libdrm
#13 7900.6 ==> meson --prefix=/opt/octopus/build/brew/Cellar/libdrm/2.4.105 --libdir=/opt/octopus/build/brew/Cellar/libdrm/2.4.105/lib --buildtype=release --wrap-mode=nofallback ..
#13 7904.2 ==> ninja
#13 7912.3 ==> ninja install
#13 7915.1 🍺  /opt/octopus/build/brew/Cellar/libdrm/2.4.105: 78 files, 1.1MB, built in 15 seconds
#13 7915.1 ==> Installing htslib dependency: wayland
#13 7915.1 ==> Pouring wayland--1.19.0.x86_64_linux.bottle.tar.gz
#13 7917.3 🍺  /opt/octopus/build/brew/Cellar/wayland/1.19.0: 39 files, 860.6KB
#13 7917.3 ==> Installing htslib dependency: libva
#13 7917.3 ==> Pouring libva--2.11.0.x86_64_linux.bottle.tar.gz
#13 7919.4 🍺  /opt/octopus/build/brew/Cellar/libva/2.11.0: 52 files, 879.3KB
#13 7919.4 ==> Installing htslib dependency: libvdpau
#13 7920.6 ==> meson --prefix=/opt/octopus/build/brew/Cellar/libvdpau/1.4 --libdir=/opt/octopus/build/brew/Cellar/libvdpau/1.4/lib --buildtype=release --wrap-mode=nofallback ..
#13 7922.4 ==> ninja
#13 7923.7 ==> ninja install
#13 7925.8 🍺  /opt/octopus/build/brew/Cellar/libvdpau/1.4: 14 files, 319.9KB, built in 6 seconds
#13 7925.8 ==> Installing htslib dependency: wayland-protocols
#13 7925.8 ==> Pouring wayland-protocols--1.20.x86_64_linux.bottle.tar.gz
#13 7927.9 🍺  /opt/octopus/build/brew/Cellar/wayland-protocols/1.20: 30 files, 528.8KB
#13 7927.9 ==> Installing htslib dependency: mesa
#13 7933.7 ==> Patching
#13 7933.7 ==> Applying 50064ad367449afad03c927f7e572c138b05c5d4.diff
#13 7933.7 patching file meson.build
#13 7933.7 ==> python3 -m venv /opt/octopus/build/brew/Cellar/mesa/21.0.3/libexec/venv
#13 7937.6 ==> /opt/octopus/build/brew/Cellar/mesa/21.0.3/libexec/venv/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /tmp/mesa--Mako-20210504-29740-kim6ro/Mako-1.1.4
#13 7939.5 ==> meson --prefix=/opt/octopus/build/brew/Cellar/mesa/21.0.3 --libdir=/opt/octopus/build/brew/Cellar/mesa/21.0.3/lib --buildtype=release --wrap-mode=nofallback .. -Db_ndebug=true -Dplatforms=x11,wayland -Dglx=auto -Ddri3=true -Ddri-drivers=auto -Dgallium-drivers=auto -Dgallium-omx=disabled -Degl=true -Dgbm=true -Dopengl=true -Dgles1=true -Dgles2=true -Dxvmc=true -Dvalgrind=false -Dtools=drm-shim,etnaviv,freedreno,glsl,nir,nouveau,xvmc,lima
#13 7952.3 ==> ninja
#13 8644.7 ==> ninja install
#13 8645.8 ==> strip --strip-unneeded --preserve-dates /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_rendering /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_context /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/glsl_compiler /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_subpicture /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_surface /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/glsl_test /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_bench /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/spirv2nir /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/xvmc_blocks /opt/octopus/build/brew/Cellar/mesa/21.0.3/bin/nouveau_compiler /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libEGL.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv2.so.2.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCr600.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGL.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv1_CM.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libgbm.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCr600.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv2.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libglapi.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libxatracker.so.2 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libnouveau_noop_drm_shim.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCnouveau.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libglapi.so.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libEGL.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libvulkan_radeon.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv2.so.2 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libxatracker.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_radeonsi.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_radeonsi.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r600.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_radeonsi.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r600.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r600.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r300.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_nouveau.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r300.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_nouveau.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r300.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_radeonsi.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_nouveau.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r300.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_nouveau.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/vdpau/libvdpau_r600.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libvulkan_intel.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/nouveau_vieux_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/i915_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/r600_drv_video.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/iris_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/r200_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/r600_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/swrast_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/r300_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/kms_swrast_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/nouveau_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/i965_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/virtio_gpu_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/radeon_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/vmwgfx_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/radeonsi_drv_video.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/nouveau_drv_video.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/dri/radeonsi_dri.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv1_CM.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCnouveau.so.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGL.so.1.2.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libgbm.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libglapi.so.0.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libvulkan_lvp.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCnouveau.so.1.0.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libgbm.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGLESv1_CM.so.1.1.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCnouveau.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCr600.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libEGL.so.1 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libxatracker.so.2.5.0 /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libGL.so /opt/octopus/build/brew/Cellar/mesa/21.0.3/lib/libXvMCr600.so.1
#13 8654.2 🍺  /opt/octopus/build/brew/Cellar/mesa/21.0.3: 1,248 files, 109.7MB, built in 12 minutes 5 seconds
#13 8654.2 ==> Installing htslib dependency: mesa-glu
#13 8654.2 ==> Pouring mesa-glu--9.0.1.x86_64_linux.bottle.tar.gz
#13 8661.1 🍺  /opt/octopus/build/brew/Cellar/mesa-glu/9.0.1: 9 files, 1.4MB
#13 8661.1 ==> Installing htslib dependency: libxinerama
#13 8661.1 ==> Pouring libxinerama--1.1.4.x86_64_linux.bottle.tar.gz
#13 8662.7 🍺  /opt/octopus/build/brew/Cellar/libxinerama/1.1.4: 17 files, 105.3KB
#13 8662.7 ==> Installing htslib dependency: xinput
#13 8662.7 ==> Pouring xinput--1.6.3.x86_64_linux.bottle.tar.gz
#13 8664.8 🍺  /opt/octopus/build/brew/Cellar/xinput/1.6.3: 9 files, 184.3KB
#13 8664.8 ==> Installing htslib dependency: freeglut
#13 8664.8 ==> Pouring freeglut--3.2.1_5.x86_64_linux.bottle.tar.gz
#13 8667.2 🍺  /opt/octopus/build/brew/Cellar/freeglut/3.2.1_5: 20 files, 1.3MB
#13 8667.2 ==> Installing htslib dependency: jasper
#13 8667.2 ==> Pouring jasper--2.0.32.x86_64_linux.bottle.tar.gz
#13 8670.1 🍺  /opt/octopus/build/brew/Cellar/jasper/2.0.32: 40 files, 1.1MB
#13 8670.1 ==> Installing htslib dependency: netpbm
#13 8670.1 ==> Pouring netpbm--10.86.21.x86_64_linux.bottle.tar.gz
#13 8702.4 🍺  /opt/octopus/build/brew/Cellar/netpbm/10.86.21: 411 files, 9.8MB
#13 8702.4 ==> Installing htslib dependency: psutils
#13 8702.4 ==> Pouring psutils--p17.x86_64_linux.bottle.1.tar.gz
#13 8704.4 🍺  /opt/octopus/build/brew/Cellar/psutils/p17: 48 files, 342.9KB
#13 8704.4 ==> Installing htslib dependency: uchardet
#13 8704.4 ==> Pouring uchardet--0.0.7.x86_64_linux.bottle.tar.gz
#13 8706.0 🍺  /opt/octopus/build/brew/Cellar/uchardet/0.0.7: 13 files, 732.3KB
#13 8706.0 ==> Installing htslib dependency: pcre
#13 8706.0 ==> Pouring pcre--8.44.x86_64_linux.bottle.tar.gz
#13 8708.3 🍺  /opt/octopus/build/brew/Cellar/pcre/8.44: 210 files, 4.9MB
#13 8708.3 ==> Installing htslib dependency: glib
#13 8710.5 ==> Patching
#13 8710.5 ==> Applying hardcoded-paths.diff
#13 8710.5 patching file gio/xdgmime/xdgmime.c
#13 8710.5 patching file glib/gutils.c
#13 8710.5 Hunk #1 succeeded at 2502 (offset 422 lines).
#13 8710.5 ==> meson --prefix=/opt/octopus/build/brew/Cellar/glib/2.68.1 --libdir=/opt/octopus/build/brew/Cellar/glib/2.68.1/lib --buildtype=release --wrap-mode=nofallback --default-library=both --localstatedir=/opt/octopus/build/brew/var -Diconv=auto -Dgio_module_dir=/opt/octopus/build/brew/lib/gio/modules -Dbsymbolic_functions=false -Ddtrace=false ..
#13 8730.8 ==> ninja -v
#13 8856.8 ==> ninja install -v
#13 8863.5 ==> Caveats
#13 8863.5 Bash completion has been installed to:
#13 8863.5   /opt/octopus/build/brew/etc/bash_completion.d
#13 8863.5 ==> Summary
#13 8863.5 🍺  /opt/octopus/build/brew/Cellar/glib/2.68.1: 448 files, 24.7MB, built in 2 minutes 34 seconds
#13 8863.5 ==> Installing htslib dependency: groff
#13 8867.1 ==> Patching
#13 8867.1 ==> Applying 1.22.4.patch
#13 8867.1 patching file src/libs/libgroff/assert.cpp
#13 8867.1 patching file src/libs/libgroff/errarg.cpp
#13 8867.1 patching file src/libs/libgroff/error.cpp
#13 8867.1 patching file src/preproc/eqn/eqn.ypp
#13 8867.1 patching file src/libs/libgroff/curtime.cpp
#13 8867.1 patching file src/libs/libgroff/device.cpp
#13 8867.1 patching file src/libs/libgroff/fatal.cpp
#13 8867.1 patching file src/libs/libgroff/string.cpp
#13 8867.1 patching file src/libs/libgroff/strsave.cpp
#13 8867.1 patching file src/preproc/eqn/text.cpp
#13 8867.1 patching file src/preproc/eqn/other.cpp
#13 8867.1 patching file src/preproc/pic/object.cpp
#13 8867.1 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/groff/1.22.4_1 --without-x --with-uchardet
#13 8888.5 ==> make
#13 8925.2 ==> make install
#13 8930.9 🍺  /opt/octopus/build/brew/Cellar/groff/1.22.4_1: 777 files, 23.7MB, built in 1 minute 6 seconds
#13 8930.9 ==> Installing htslib dependency: openldap
#13 8932.8 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/openldap/2.4.58 --sysconfdir=/opt/octopus/build/brew/etc --localstatedir=/opt/octopus/build/brew/var --enable-accesslog --enable-auditlog --enable-bdb=no --enable-constraint --enable-dds --enable-deref --enable-dyngroup --enable-dynlist --enable-hdb=no --enable-memberof --enable-ppolicy --enable-proxycache --enable-refint --enable-retcode --enable-seqmod --enable-translucent --enable-unique --enable-valsort
#13 8960.6 ==> make install
#13 9041.3 🍺  /opt/octopus/build/brew/Cellar/openldap/2.4.58: 296 files, 7.5MB, built in 1 minute 50 seconds
#13 9041.3 ==> Installing htslib dependency: rtmpdump
#13 9041.3 ==> Pouring rtmpdump--2.4+20151223_1.x86_64_linux.bottle.tar.gz
#13 9043.5 🍺  /opt/octopus/build/brew/Cellar/rtmpdump/2.4+20151223_1: 21 files, 610.5KB
#13 9043.5 ==> Installing htslib dependency: zstd
#13 9043.5 ==> Pouring zstd--1.4.9_1.x86_64_linux.bottle.tar.gz
#13 9045.5 🍺  /opt/octopus/build/brew/Cellar/zstd/1.4.9_1: 31 files, 2.6MB
#13 9045.5 ==> Installing htslib dependency: krb5
#13 9048.6 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/krb5/1.19.1_2 --without-system-verto --without-keyutils
#13 9075.0 ==> make
#13 9141.4 ==> make install
#13 9147.7 🍺  /opt/octopus/build/brew/Cellar/krb5/1.19.1_2: 165 files, 5MB, built in 1 minute 42 seconds
#13 9147.7 ==> Installing htslib dependency: curl
#13 9147.7 ==> Pouring curl--7.76.1_1.x86_64_linux.bottle.tar.gz
#13 9150.1 🍺  /opt/octopus/build/brew/Cellar/curl/7.76.1_1: 485 files, 4.4MB
#13 9150.1 ==> Installing htslib
#13 9152.3 ==> ./configure --prefix=/opt/octopus/build/brew/Cellar/htslib/1.12 --enable-libcurl
#13 9156.6 ==> make install
#13 9185.5 🍺  /opt/octopus/build/brew/Cellar/htslib/1.12: 48 files, 5.3MB, built in 35 seconds
#13 9262.9 ==> Caveats
#13 9262.9 ==> perl
#13 9262.9 By default non-brewed cpan modules are installed to the Cellar. If you wish
#13 9262.9 for your modules to persist across updates we recommend using `local::lib`.
#13 9262.9
#13 9262.9 You can set that up like this:
#13 9262.9   PERL_MM_OPT="INSTALL_BASE=$HOME/perl5" cpan local::lib
#13 9262.9   echo 'eval "$(perl -I$HOME/perl5/lib/perl5 -Mlocal::lib=$HOME/perl5)"' >> ~/.profile
#13 9262.9 ==> util-linux
#13 9262.9 Bash completion has been installed to:
#13 9262.9   /opt/octopus/build/brew/etc/bash_completion.d
#13 9262.9 ==> libidn
#13 9262.9 Emacs Lisp files have been installed to:
#13 9262.9   /opt/octopus/build/brew/share/emacs/site-lisp/libidn
#13 9262.9 ==> python@3.9
#13 9262.9 Python has been installed as
#13 9262.9   /opt/octopus/build/brew/bin/python3
#13 9262.9
#13 9262.9 Unversioned symlinks `python`, `python-config`, `pip` etc. pointing to
#13 9262.9 `python3`, `python3-config`, `pip3` etc., respectively, have been installed into
#13 9262.9   /opt/octopus/build/brew/opt/python@3.9/libexec/bin
#13 9262.9
#13 9262.9 You can install Python packages with
#13 9262.9   pip3 install <package>
#13 9262.9 They will install into the site-package directory
#13 9262.9   /opt/octopus/build/brew/lib/python3.9/site-packages
#13 9262.9
#13 9262.9 tkinter is no longer included with this formula, but it is available separately:
#13 9262.9   brew install python-tk@3.9
#13 9262.9
#13 9262.9 See: https://docs.brew.sh/Homebrew-and-Python
#13 9262.9 ==> ninja
#13 9262.9 Bash completion has been installed to:
#13 9262.9   /opt/octopus/build/brew/etc/bash_completion.d
#13 9262.9 ==> llvm
#13 9262.9 To use the bundled libc++ please add the following LDFLAGS:
#13 9262.9   LDFLAGS="-L/opt/octopus/build/brew/opt/llvm/lib -Wl,-rpath,/opt/octopus/build/brew/opt/llvm/lib"
#13 9262.9
#13 9262.9 Emacs Lisp files have been installed to:
#13 9262.9   /opt/octopus/build/brew/share/emacs/site-lisp/llvm
#13 9262.9 ==> glib
#13 9262.9 Bash completion has been installed to:
#13 9262.9   /opt/octopus/build/brew/etc/bash_completion.d
#13 9263.3 -- The C compiler identification is GNU 10.2.0
#13 9263.5 -- The CXX compiler identification is GNU 10.2.0
#13 9263.5 -- Detecting C compiler ABI info
#13 9263.6 -- Detecting C compiler ABI info - done
#13 9263.6 -- Check for working C compiler: /opt/octopus/build/brew/Cellar/gcc/10.2.0_4/bin/gcc-10 - skipped
#13 9263.6 -- Detecting C compile features
#13 9263.6 -- Detecting C compile features - done
#13 9263.6 -- Detecting CXX compiler ABI info
#13 9263.7 -- Detecting CXX compiler ABI info - done
#13 9263.8 -- Check for working CXX compiler: /opt/octopus/build/brew/Cellar/gcc/10.2.0_4/bin/g++-10 - skipped
#13 9263.8 -- Detecting CXX compile features
#13 9263.8 -- Detecting CXX compile features - done
#13 9263.8 fatal: not a git repository (or any of the parent directories): .git
#13 9263.8 fatal: not a git repository (or any of the parent directories): .git
#13 9263.8 -- Build type: Release
#13 9263.8 -- Installation prefix: /opt/octopus/bin
#13 9264.3 -- Could not find hardware support for AVX2 on this machine.
#13 9264.3 -- Linking against boost dynamic libraries
#13 9264.3 -- Looking for pthread.h
#13 9264.4 -- Looking for pthread.h - found
#13 9264.4 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
#13 9264.5 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
#13 9264.5 -- Check if compiler accepts -pthread
#13 9264.6 -- Check if compiler accepts -pthread - yes
#13 9264.6 -- Found Threads: TRUE
#13 9264.6 -- Found Boost: /opt/octopus/build/brew/include (found suitable version "1.75.0", minimum required is "1.65") found components: system filesystem program_options date_time log_setup log iostreams timer thread regex chrono atomic
#13 9264.6 -- Boost include dir: /opt/octopus/build/brew/include
#13 9264.6 -- Boost libraries: /opt/octopus/build/brew/lib/libboost_system-mt.so/opt/octopus/build/brew/lib/libboost_filesystem-mt.so/opt/octopus/build/brew/lib/libboost_program_options-mt.so/opt/octopus/build/brew/lib/libboost_date_time-mt.so/opt/octopus/build/brew/lib/libboost_log_setup-mt.so/opt/octopus/build/brew/lib/libboost_log-mt.so/opt/octopus/build/brew/lib/libboost_iostreams-mt.so/opt/octopus/build/brew/lib/libboost_timer-mt.so/opt/octopus/build/brew/lib/libboost_thread-mt.so-pthread/opt/octopus/build/brew/lib/libboost_regex-mt.so/opt/octopus/build/brew/lib/libboost_chrono-mt.so/opt/octopus/build/brew/lib/libboost_atomic-mt.so
#13 9264.6 -- GMP_INCLUDES=/opt/octopus/build/brew/include
#13 9264.6 -- Found GMP: /opt/octopus/build/brew/include (Required is at least version "5.1.0")
#13 9264.6 -- GMP include dir: /opt/octopus/build/brew/include
#13 9264.6 -- GMP libraries: /opt/octopus/build/brew/lib/libgmp.so
#13 9264.7 -- Found HTSlib
#13 9264.7 --    HTSlib include dirs: /opt/octopus/build/brew/include
#13 9264.7 --    HTSlib libraries: /opt/octopus/build/brew/lib/libhts.so
#13 9265.2 -- IPO is supported!
#13 9265.2 -- Configuring done
#13 9265.3 -- Generating done
#13 9265.3 -- Build files have been written to: /opt/octopus/build
#13 9265.3 [  1%] Building CXX object lib/date/CMakeFiles/date-tz.dir/tz.cpp.o
#13 9265.3 [  1%] Building C object lib/tandem/libdivsufsort/CMakeFiles/libdivsufsort.dir/divsufsort.c.o
#13 9265.3 [  1%] Building C object lib/tandem/libdivsufsort/CMakeFiles/libdivsufsort.dir/sssort.c.o
#13 9265.4 [  1%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/Data.cpp.o
#13 9265.6 [  1%] Building C object lib/tandem/libdivsufsort/CMakeFiles/libdivsufsort.dir/trsort.c.o
#13 9266.1 [  2%] Building C object lib/tandem/libdivsufsort/CMakeFiles/libdivsufsort.dir/utils.c.o
#13 9266.2 [  2%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/Forest.cpp.o
#13 9266.3 [  2%] Linking C static library liblibdivsufsort.a
#13 9266.3 [  2%] Built target libdivsufsort
#13 9266.4 [  3%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/ForestClassification.cpp.o
#13 9267.9 [  3%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/ForestProbability.cpp.o
#13 9269.6 [  4%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/ForestRegression.cpp.o
#13 9270.6 [  4%] Linking CXX static library libdate-tz.a
#13 9270.6 [  4%] Built target date-tz
#13 9270.6 [  4%] Building CXX object lib/tandem/CMakeFiles/tandem.dir/tandem.cpp.o
#13 9271.7 [  4%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/ForestSurvival.cpp.o
#13 9271.9 [  5%] Linking CXX static library libtandem.a
#13 9271.9 [  5%] Built target tandem
#13 9271.9 [  5%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/Tree.cpp.o
#13 9272.2 [  6%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/TreeClassification.cpp.o
#13 9272.9 [  6%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/TreeProbability.cpp.o
#13 9275.4 [  7%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/TreeRegression.cpp.o
#13 9275.4 [  7%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/TreeSurvival.cpp.o
#13 9276.2 [  7%] Building CXX object lib/ranger/CMakeFiles/ranger.dir/utility.cpp.o
#13 9279.5 [  8%] Linking CXX static library libranger.a
#13 9279.5 [  8%] Built target ranger
#13 9279.5 [  9%] Building CXX object src/CMakeFiles/octopus.dir/config/common.cpp.o
#13 9279.5 [  9%] Building CXX object src/CMakeFiles/octopus.dir/config/config.cpp.o
#13 9279.5 [ 10%] Building CXX object src/CMakeFiles/octopus.dir/config/option_parser.cpp.o
#13 9279.5 [ 10%] Building CXX object src/CMakeFiles/octopus.dir/main.cpp.o
#13 9281.4 [ 10%] Building CXX object src/CMakeFiles/octopus.dir/config/option_collation.cpp.o
#13 9291.0 [ 11%] Building CXX object src/CMakeFiles/octopus.dir/config/octopus_vcf.cpp.o
#13 9293.4 [ 11%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/error.cpp.o
#13 9294.1 [ 11%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/missing_file_error.cpp.o
#13 9294.4 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9294.4                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9294.4                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9294.4                  from /opt/octopus/src/config/common.hpp:20,
#13 9294.4                  from /opt/octopus/src/main.cpp:10:
#13 9294.4 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9294.4    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9294.4       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9295.1 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/program_options/options_description.hpp:16,
#13 9295.1                  from /opt/octopus/build/brew/include/boost/program_options.hpp:15,
#13 9295.1                  from /opt/octopus/src/config/option_parser.hpp:10,
#13 9295.1                  from /opt/octopus/src/config/option_parser.cpp:4:
#13 9295.1 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9295.1    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9295.1       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9296.5 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/program_options/options_description.hpp:16,
#13 9296.5                  from /opt/octopus/build/brew/include/boost/program_options.hpp:15,
#13 9296.5                  from /opt/octopus/src/config/option_collation.hpp:10,
#13 9296.5                  from /opt/octopus/src/config/option_collation.cpp:4:
#13 9296.5 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9296.5    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9296.5       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9296.6 [ 12%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/malformed_file_error.cpp.o
#13 9299.7 [ 12%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/missing_index_error.cpp.o
#13 9302.3 [ 13%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/unwritable_file_error.cpp.o
#13 9305.3 [ 13%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/unimplemented_feature_error.cpp.o
#13 9306.3 [ 13%] Building CXX object src/CMakeFiles/octopus.dir/exceptions/file_open_error.cpp.o
#13 9308.0 [ 14%] Building CXX object src/CMakeFiles/octopus.dir/basics/cigar_string.cpp.o
#13 9308.8 [ 14%] Building CXX object src/CMakeFiles/octopus.dir/basics/aligned_read.cpp.o
#13 9308.9 [ 15%] Building CXX object src/CMakeFiles/octopus.dir/basics/ploidy_map.cpp.o
#13 9311.8 [ 15%] Building CXX object src/CMakeFiles/octopus.dir/basics/pedigree.cpp.o
#13 9316.8 [ 15%] Building CXX object src/CMakeFiles/octopus.dir/basics/trio.cpp.o
#13 9318.3 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/property_map/vector_property_map.hpp:14,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/property_map/property_map.hpp:602,
#13 9318.3                  from /opt/octopus/build/brew/include/boost/graph/adjacency_list.hpp:27,
#13 9318.3                  from /opt/octopus/src/basics/pedigree.hpp:11,
#13 9318.3                  from /opt/octopus/src/basics/pedigree.cpp:4:
#13 9318.3 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9318.3    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9318.3       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9320.8 [ 16%] Building CXX object src/CMakeFiles/octopus.dir/basics/read_pileup.cpp.o
#13 9322.2 [ 16%] Building CXX object src/CMakeFiles/octopus.dir/basics/tandem_repeat.cpp.o
#13 9324.0 [ 17%] Building CXX object src/CMakeFiles/octopus.dir/basics/aligned_template.cpp.o
#13 9326.0 [ 17%] Building CXX object src/CMakeFiles/octopus.dir/logging/logging.cpp.o
#13 9327.0 [ 17%] Building CXX object src/CMakeFiles/octopus.dir/logging/progress_meter.cpp.o
#13 9328.0 [ 18%] Building CXX object src/CMakeFiles/octopus.dir/logging/error_handler.cpp.o
#13 9334.1 [ 18%] Building CXX object src/CMakeFiles/octopus.dir/logging/main_logging.cpp.o
#13 9338.3 [ 18%] Building CXX object src/CMakeFiles/octopus.dir/io/reference/caching_fasta.cpp.o
#13 9342.7 [ 19%] Building CXX object src/CMakeFiles/octopus.dir/io/reference/fasta.cpp.o
#13 9343.2 [ 19%] Building CXX object src/CMakeFiles/octopus.dir/io/reference/reference_genome.cpp.o
#13 9346.8 [ 20%] Building CXX object src/CMakeFiles/octopus.dir/io/reference/threadsafe_fasta.cpp.o
#13 9346.9 [ 20%] Building CXX object src/CMakeFiles/octopus.dir/io/region/region_parser.cpp.o
#13 9347.0 [ 20%] Building CXX object src/CMakeFiles/octopus.dir/io/pedigree/pedigree_reader.cpp.o
#13 9347.6 [ 21%] Building CXX object src/CMakeFiles/octopus.dir/io/read/htslib_sam_facade.cpp.o
#13 9350.7 [ 21%] Building CXX object src/CMakeFiles/octopus.dir/io/read/read_manager.cpp.o
#13 9355.1 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/property_map/vector_property_map.hpp:14,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/property_map/property_map.hpp:602,
#13 9355.1                  from /opt/octopus/build/brew/include/boost/graph/adjacency_list.hpp:27,
#13 9355.1                  from /opt/octopus/src/basics/pedigree.hpp:11,
#13 9355.1                  from /opt/octopus/src/io/pedigree/pedigree_reader.hpp:9,
#13 9355.1                  from /opt/octopus/src/io/pedigree/pedigree_reader.cpp:4:
#13 9355.1 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9355.1    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9355.1       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9357.0 [ 22%] Building CXX object src/CMakeFiles/octopus.dir/io/read/read_reader.cpp.o
#13 9358.4 [ 22%] Building CXX object src/CMakeFiles/octopus.dir/io/read/read_writer.cpp.o
#13 9360.3 [ 22%] Building CXX object src/CMakeFiles/octopus.dir/io/read/annotated_aligned_read.cpp.o
#13 9361.4 [ 23%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/htslib_bcf_facade.cpp.o
#13 9362.3 [ 23%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_header.cpp.o
#13 9362.5 [ 24%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_parser.cpp.o
#13 9364.6 [ 24%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_reader.cpp.o
#13 9366.2 [ 24%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_record.cpp.o
#13 9372.9 [ 25%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_type.cpp.o
#13 9373.0 [ 25%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_utils.cpp.o
#13 9374.2 [ 26%] Building CXX object src/CMakeFiles/octopus.dir/io/variant/vcf_writer.cpp.o
#13 9375.1 [ 26%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/read_pipe.cpp.o
#13 9376.7 [ 26%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/buffered_read_pipe.cpp.o
#13 9383.2 [ 27%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/downsampling/downsampler.cpp.o
#13 9384.9 [ 27%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/filtering/read_filter.cpp.o
#13 9387.8 [ 28%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/transformers/read_transform.cpp.o
#13 9396.3 [ 28%] Building CXX object src/CMakeFiles/octopus.dir/readpipe/transformers/read_transformer.cpp.o
#13 9396.6 [ 28%] Building CXX object src/CMakeFiles/octopus.dir/utils/compression.cpp.o
#13 9397.1 [ 29%] Building CXX object src/CMakeFiles/octopus.dir/utils/path_utils.cpp.o
#13 9399.6 [ 29%] Building CXX object src/CMakeFiles/octopus.dir/utils/read_stats.cpp.o
#13 9399.7 [ 30%] Building CXX object src/CMakeFiles/octopus.dir/utils/string_utils.cpp.o
#13 9400.2 [ 30%] Building CXX object src/CMakeFiles/octopus.dir/utils/input_reads_profiler.cpp.o
#13 9400.3 [ 30%] Building CXX object src/CMakeFiles/octopus.dir/utils/kmer_mapper.cpp.o
#13 9401.1 [ 31%] Building CXX object src/CMakeFiles/octopus.dir/utils/memory_footprint.cpp.o
#13 9406.7 [ 31%] Building CXX object src/CMakeFiles/octopus.dir/utils/repeat_finder.cpp.o
#13 9406.7 [ 31%] Building CXX object src/CMakeFiles/octopus.dir/utils/genotype_reader.cpp.o
#13 9407.4 [ 32%] Building CXX object src/CMakeFiles/octopus.dir/utils/thread_pool.cpp.o
#13 9408.8 [ 32%] Building CXX object src/CMakeFiles/octopus.dir/utils/system_utils.cpp.o
#13 9408.9 [ 33%] Building CXX object src/CMakeFiles/octopus.dir/utils/read_duplicates.cpp.o
#13 9411.5 [ 33%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/caller_builder.cpp.o
#13 9411.7 [ 33%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/caller_factory.cpp.o
#13 9420.5 [ 34%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/caller.cpp.o
#13 9422.5 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9422.5                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9422.5                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9422.5                  from /opt/octopus/src/config/common.hpp:20,
#13 9422.5                  from /opt/octopus/src/core/callers/caller_builder.hpp:14,
#13 9422.5                  from /opt/octopus/src/core/callers/caller_builder.cpp:4:
#13 9422.5 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9422.5    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9422.5       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9425.7 [ 34%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/cancer_caller.cpp.o
#13 9426.7 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9426.7                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9426.7                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9426.7                  from /opt/octopus/src/config/common.hpp:20,
#13 9426.7                  from /opt/octopus/src/core/callers/caller.hpp:18,
#13 9426.7                  from /opt/octopus/src/core/callers/caller_factory.hpp:11,
#13 9426.7                  from /opt/octopus/src/core/callers/caller_factory.cpp:4:
#13 9426.7 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9426.7    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9426.7       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9435.1 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9435.1                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9435.1                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9435.1                  from /opt/octopus/src/config/common.hpp:20,
#13 9435.1                  from /opt/octopus/src/core/callers/caller.hpp:18,
#13 9435.1                  from /opt/octopus/src/core/callers/caller.cpp:4:
#13 9435.1 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9435.1    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9435.1       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9435.3 [ 35%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/individual_caller.cpp.o
#13 9438.8 [ 35%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/population_caller.cpp.o
#13 9442.7 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9442.7                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9442.7                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9442.7                  from /opt/octopus/src/config/common.hpp:20,
#13 9442.7                  from /opt/octopus/src/core/callers/cancer_caller.hpp:15,
#13 9442.7                  from /opt/octopus/src/core/callers/cancer_caller.cpp:4:
#13 9442.7 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9442.7    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9442.7       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9452.2 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9452.2                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9452.2                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9452.2                  from /opt/octopus/src/config/common.hpp:20,
#13 9452.2                  from /opt/octopus/src/core/callers/individual_caller.hpp:13,
#13 9452.2                  from /opt/octopus/src/core/callers/individual_caller.cpp:4:
#13 9452.2 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9452.2    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9452.2       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9455.8 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9455.8                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9455.8                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9455.8                  from /opt/octopus/src/config/common.hpp:20,
#13 9455.8                  from /opt/octopus/src/core/callers/population_caller.hpp:13,
#13 9455.8                  from /opt/octopus/src/core/callers/population_caller.cpp:4:
#13 9455.8 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9455.8    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9455.8       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9461.7 [ 35%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/trio_caller.cpp.o
#13 9470.4 [ 36%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/polyclone_caller.cpp.o
#13 9471.1 [ 36%] Building CXX object src/CMakeFiles/octopus.dir/core/callers/cell_caller.cpp.o
#13 9476.3 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9476.3                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9476.3                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9476.3                  from /opt/octopus/src/config/common.hpp:20,
#13 9476.3                  from /opt/octopus/src/core/callers/caller.hpp:18,
#13 9476.3                  from /opt/octopus/src/core/callers/trio_caller.hpp:10,
#13 9476.3                  from /opt/octopus/src/core/callers/trio_caller.cpp:4:
#13 9476.3 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9476.3    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9476.3       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9487.6 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9487.6                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9487.6                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9487.6                  from /opt/octopus/src/config/common.hpp:20,
#13 9487.6                  from /opt/octopus/src/core/callers/polyclone_caller.hpp:14,
#13 9487.6                  from /opt/octopus/src/core/callers/polyclone_caller.cpp:4:
#13 9487.6 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9487.6    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9487.6       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9488.1 In file included from /opt/octopus/build/brew/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/yield_k.hpp:23,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock.hpp:42,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/smart_ptr/shared_ptr.hpp:29,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/shared_ptr.hpp:17,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/date_time/time_clock.hpp:17,
#13 9488.1                  from /opt/octopus/build/brew/include/boost/date_time/posix_time/posix_time_types.hpp:10,
#13 9488.1                  from /opt/octopus/src/logging/logging.hpp:17,
#13 9488.1                  from /opt/octopus/src/config/common.hpp:20,
#13 9488.1                  from /opt/octopus/src/core/callers/cell_caller.hpp:14,
#13 9488.1                  from /opt/octopus/src/core/callers/cell_caller.cpp:4:
#13 9488.1 /opt/octopus/build/brew/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use <iterator> instead.'
#13 9488.1    13 | BOOST_HEADER_DEPRECATED("<iterator>")
#13 9488.1       | ^~~~~~~~~~~~~~~~~~~~~~~
#13 9495.8 [ 37%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/call.cpp.o
#13 9508.7 [ 37%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/germline_variant_call.cpp.o
#13 9512.5 [ 37%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/reference_call.cpp.o
#13 9525.5 [ 38%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/somatic_call.cpp.o
#13 9529.3 [ 38%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/variant_call.cpp.o
#13 9546.6 [ 39%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/denovo_call.cpp.o
#13 9548.1 [ 39%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/denovo_reference_reversion_call.cpp.o
#13 9615.4 g++-10: fatal error: Killed signal terminated program cc1plus
#13 9615.4 compilation terminated.
#13 9615.5 make[2]: *** [src/CMakeFiles/octopus.dir/build.make:986: src/CMakeFiles/octopus.dir/core/callers/cancer_caller.cpp.o] Error 1
#13 9615.5 make[2]: *** Waiting for unfinished jobs....
#13 9740.0 make[1]: *** [CMakeFiles/Makefile2:291: src/CMakeFiles/octopus.dir/all] Error 2
#13 9740.1 make: *** [Makefile:136: all] Error 2
#13 9817.5 No bin directory found, making one
#13 9817.5 Installing Octopus 0.7.3
#13 9817.5 No forest directory found, making one
#13 9817.5 Downloading https://storage.googleapis.com/luntergroup/octopus/forests/germline.v0.7.3.forest.gz to /opt/octopus/resources/forests/germline.v0.7.3.forest.gz
#13 9817.5 Downloading https://storage.googleapis.com/luntergroup/octopus/forests/somatic.v0.7.3.forest.gz to /opt/octopus/resources/forests/somatic.v0.7.3.forest.gz
------
executor failed running [/bin/sh -c /opt/octopus/scripts/install.py     --dependencies     --forests     --threads $threads     --architecture $architecture]: exit code: 2

[dancooke]

@cariaso Can you retry with more memory (e.g., docker build -t oct1:latest -m 6g octopus)?

[cariaso]

I've now done so. identical result.

docker build -t oct1:latest -m 6g octopus

...
#14 14329.5 [ 38%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/denovo_reference_reversion_call.cpp.o
#14 14329.5 [ 39%] Building CXX object src/CMakeFiles/octopus.dir/core/types/calls/denovo_call.cpp.o
#14 14369.0 g++-11: fatal error: Killed signal terminated program cc1plus
#14 14369.0 compilation terminated.
#14 14369.1 make[2]: *** [src/CMakeFiles/octopus.dir/build.make:986: src/CMakeFiles/octopus.dir/core/callers/cancer_caller.cpp.o] Error 1
#14 14369.1 make[2]: *** Waiting for unfinished jobs....
#14 14476.6 make[1]: *** [CMakeFiles/Makefile2:291: src/CMakeFiles/octopus.dir/all] Error 2
#14 14476.6 make: *** [Makefile:136: all] Error 2
#14 14486.1 No bin directory found, making one
#14 14486.1 Installing Octopus 0.7.3
#14 14486.1 No forest directory found, making one
#14 14486.1 Downloading https://storage.googleapis.com/luntergroup/octopus/forests/germline.v0.7.3.forest.gz to /opt/octopus/resources/forests/germline.v0.7.3.forest.gz
#14 14486.1 Failed to download forest germline.v0.7.3.forest.gz
#14 14486.1 Downloading https://storage.googleapis.com/luntergroup/octopus/forests/somatic.v0.7.3.forest.gz to /opt/octopus/resources/forests/somatic.v0.7.3.forest.gz
#14 14486.1 Failed to download forest somatic.v0.7.3.forest.gz
------
executor failed running [/bin/sh -c /opt/octopus/scripts/install.py     --dependencies     --forests     --threads $threads     --architecture $architecture]: exit code: 2

[dancooke]

Ok. I'm fairly confident that this is a memory-related issue so perhaps try increasing the memory even more. You could also try limiting building to a single thread:

$ docker build -t oct1:latest -m 10g --build-arg threads=1 octopus

[cariaso]

docker build -t oct1:latest -m 12g octopus fails. so memory wasn't the issue.

docker build -t oct1:latest -m 12g --build-arg threads=1 octopus works

docker build -t oct1:latest --build-arg threads=1 octopus works

so the issue is resolved by --build-arg threads=1