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luntergroup / octopus

Bayesian haplotype-based mutation calling
MIT License
301 stars 37 forks source link

Failed to download forest files #167

Closed satzel closed 3 years ago

satzel commented 3 years ago

Describe the bug When trying to run ./scripts/install.py --forests to download the respective forest files it fails. Looking at it it seems like the googlebucket contains v.0.7.2 but the script calls for 0.7.1?

Version


$ octopus --version
octopus version 0.7.1
Target: x86_64 Linux 3.10.0-1127.18.2.el7.x86_64
SIMD extension: AVX512
Compiler: GNU 10.2.0
Boost: 1_74

``
This is the output:

Install the project...
-- Install configuration: "Release"
-- Installing: /tmp/octopus-0.7.1/bin/octopus
No forest directory found, making one
Downloading https://storage.googleapis.com/luntergroup/octopus/forests/germline.v0.7.1.forest.gz to /tmp/octopus-0.7.1/resources/forests/germline.v0.7.1.forest.gz
Failed to download forest germline.v0.7.1.forest.gz
Downloading https://storage.googleapis.com/luntergroup/octopus/forests/somatic.v0.7.1.forest.gz to /tmp/octopus-0.7.1/resources/forests/somatic.v0.7.1.forest.gz
Failed to download forest somatic.v0.7.1.forest.gz
satzel commented 3 years ago

I assume I should just get octopus version 0.7.2 to solve this...

satzel commented 3 years ago

updated to 0.7.2 and gonna close this, cheers

dancooke commented 3 years ago

When trying to run ./scripts/install.py --forests to download the respective forest files it fails. Looking at it it seems like the googlebucket contains v.0.7.2 but the script calls for 0.7.1?

Thanks - yes this is because I forgot to bump the version number in the source code for the v0.7.2 release.