Open PfeiferLab opened 2 years ago
Thanks for the bug report. Probably the quickest way to get this resolved is if you provide me with the BAM and FASTA files. Either Google Drive or DropBox works.
Thank you for looking into this, @dancooke ! I emailed you a link to the .bam and .fasta files.
I ran into a segfault recently #228, might not be realted as this is with the trio model. I've patched the segfault in #229 to throw error messages instead of segfaulting.
Hi,
Similar to one of the previous tickets (Segfault occurring during somatic variant calling #50), I am experiencing a Segmentation Fault for certain chromosomes when trying to run Octopus in the Trio mode, e.g.
Version:
Command line:
Changing the memory size results in different errors (though the debug log doesn’t contain any errors). Happy to share the .bam and .fasta files via GoogleDrive or Dropbox in case it might be helpful!
Any help would be greatly appreciated!