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luntergroup / octopus

Bayesian haplotype-based mutation calling
MIT License
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INFO/MQ Float in VCF v4.3 #231

Closed jdm204 closed 2 years ago

jdm204 commented 2 years ago

Hi,

My Octopus VCFs are failing some validation checks because the VCF v4.3 spec defines INFO/MQ to be a Float, but Octopus (v0.7.4) uses integers in the header and actual values - is there a strong reason for this to be the case?

dancooke commented 2 years ago

Thanks - corrected.