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luntergroup / octopus

Bayesian haplotype-based mutation calling
MIT License
305 stars 38 forks source link

germline.v0.7.4.forest.gz #261

Closed gambalab closed 1 year ago

gambalab commented 1 year ago

Can someone share it? Since it is not possible to download from gs://luntergroup/octopus/forests/

ghost commented 1 year ago

I have the same issue, is Octopus now an abandonware? Would be dramatic for the community. I opened an "upfront" issue... if there is a problem to host the files, like costing issue, I am certain the community can help.

gerton commented 1 year ago

Sorry everyone, downloads got out of hand and so did the costs. We’re working on a solution.

Best Gerton

On 12 Jul 2023, at 13:06, Axze-rgb @.***> wrote:

I have the same issue, is Octopus now an abandonware? Would be dramatic for the community.

— Reply to this email directly, view it on GitHub https://github.com/luntergroup/octopus/issues/261#issuecomment-1632299867, or unsubscribe https://github.com/notifications/unsubscribe-auth/AA67GPU3FVOQD523HARUNPTXP2AKTANCNFSM6AAAAAAZYIQNQM. You are receiving this because you are subscribed to this thread.

jflot commented 1 year ago

I would recommend using Zenodo (https://zenodo.org/), it is completely free and datasets can be up to 50 Gb (there is even way to request them to host larger files, if needed, see https://help.zenodo.org/). As a bonus your dataset will get a DOI and a direct download link.

ghost commented 1 year ago

The Zelondo solution seems appropriate. Do you have an idea of when the files will be available again? I need them.

Thanks for Octopus

dancooke commented 1 year ago

Thanks for the suggestion @jflot - I'll look into that asap. Closing as duplicate of #259.

gambalab commented 1 year ago

figshare is an other free solution.. plus has a DOI and can be cited :)