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luntergroup / octopus

Bayesian haplotype-based mutation calling
MIT License
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Build fails, is there a singularity? #278

Open ESDeutekom opened 7 months ago

ESDeutekom commented 7 months ago

I cannot install the tool via bioconda, because the recipe is broken. I also cannot build from git, because there are several warning and then the install just fails.

Can you maybe host the docker container on the docker repo? I cannot find it there. It would save many people the headache (as I see form the multiple issues related to this). In that way we do not need to find a way to make a singularity image from a docker file to run it from HPC systems, or to install and update all the dependencies needed to run this tool from git build.

Thank you in advance.

Kind regards,

ESDeutekom commented 7 months ago

there is! For some reason it does not pop up in docker hub search, but for everyone in need: https://luntergroup.github.io/octopus/docs/installation#singularity