This introduces the simulation step at the beginning of each EM iteration for the purpose of calibrating the lags and the bias ratios for the upper and lower parts of the tree. ModelSummary is the class containing information on the expected branch lengths in each epoch under the current model.
This introduces the simulation step at the beginning of each EM iteration for the purpose of calibrating the lags and the bias ratios for the upper and lower parts of the tree. ModelSummary is the class containing information on the expected branch lengths in each epoch under the current model.