search

luoyunan / DTINet

A Network Integration Approach for Drug-Target Interaction Prediction
GNU General Public License v3.0
172 stars 60 forks source link

Something went wrong on my mac when install IMC #2

Closed kun931213 closed 6 years ago

kun931213 commented 6 years ago

Hi~ I'm a Ph.D. candidate and going to follow ur algorithm. I found everything went well except installing the IMC module. When I run the IMC install script (download_imc.sh) on my Mac in terminal.app, warnings will happen:

mkdir -p matlab; cd src/matlab; matlab -nodisplay -nosplash -nojvm -r "make; exit"; cp mex ../../matlab/ /bin/sh: matlab: command not found cp: mex: No such file or directory make: *** [matlab] Error 1

Finally, I found there may be something wrong with the code in your script(download_imc.sh) : make matlab.

This code does not work well on mac (osx system).

I do not know how to resolve this problem. Could you please help me?

Thank u a lot!

luoyunan commented 6 years ago

Hi @kun931213 ,

This is not an issue of DTINet. It seems the error occurred when you installed the IMC dependency (called by download_ims.sh).

As it showed /bin/sh: matlab: command not found, I guess the reason you had the error is that you don't have MATLAB installed on your Mac, or the directory of MATLAB hasn't been set properly in the PATH environment variable.

Hope this is helpful!

kun931213 commented 6 years ago

Hi~ i checked again to confirm that i do have matlab. However, sadly, it went wrong on my mac agian and again. The "make matlab" code just can't work!

What do u mean the directory of MATLAB hasn't been set properly in the PATH environment variable? i use the [terminal] to execute all the command lines, i did not choose Path environment at all and i do not know how to choose the Path environment.

Thank u for ur reply!

kun931213 commented 6 years ago

Are u still in THU? U know, Im a Phd candidate in THU (School of basic medical sciences). We may meet and take a few minutes to solve the problem. That will be really nice and helpful of u! Thank u again~! My wechat number is : kun931213, please add me if u want.