search

luoyunan / DTINet

A Network Integration Approach for Drug-Target Interaction Prediction
GNU General Public License v3.0
173 stars 60 forks source link

how to run this project #7

Closed jenny1022 closed 4 years ago

jenny1022 commented 5 years ago

Hi, I want to run this project now, and I'll follow your instructions in Tutorial. But I have the following questions to ask you. 1.I want to know what interaction/association matrices is in the first step in Tutorial. 2.I wonder if it is necessary to install this imc? I have downloaded your project, I find its compressed package in src directory. Does that mean I don't need to install it anymore? And how can I use this imc if I want to run the DTINet. 3.Will I be able to run successfully after these steps?

Please help me, I really spent a lot of time on this project. Thanks a lot!

luoyunan commented 5 years ago

Hi @jenny1022

Sorry for the late response.

  1. Interaction/association matrices are drug-related and protein-related matrices, e.g., protein-protein interaction matrix, drug-disease association matrix, protein-disease association matrix, etc. You can find all the necessary data in the data/ folder.

  2. Yes. The IMC library is needed. You can run bash install_imc.sh in the src/ directory to install the IMC library.

  3. You should be able to run DTINet following the steps described in the Tutorial. Feel free to ask if you have any questions.