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lutteropp / NetRAX

Phylogenetic Network Inference without ILS
GNU General Public License v3.0
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Experimental Results for running NetRAX on tiny datasets (4-10 taxa) are here! #17

Closed lutteropp closed 3 years ago

lutteropp commented 3 years ago

See this slack message for 0 simulated reticulations: https://exelixis-lab.slack.com/archives/CGBUC51L6/p1606756198134800

lutteropp commented 3 years ago

See this slack message for 1-2 simulated reticulations: https://exelixis-lab.slack.com/archives/CGBUC51L6/p1606768776152700

lutteropp commented 3 years ago

The 0 simulated reticulations experiments now also have some plots, see the thread in this slack message: https://exelixis-lab.slack.com/archives/CGBUC51L6/p1606756198134800

lutteropp commented 3 years ago

Some initial BIC and logl plots for the 1-2 reticulation experiments are now also here: https://exelixis-lab.slack.com/archives/CGBUC51L6/p1606768776152700

celinescornavacca commented 3 years ago

Can you post the figures here, please?

celinescornavacca commented 3 years ago

I really do not want to use Slack anymore, a part for quick questions/answers. Discussions on the performances should be done here, and not split into several places. Sorry but I try to be more efficient

stamatak commented 3 years ago

I agree, we should move all over here

On 01.12.20 11:15, celinescornavacca wrote:

I really do not want to use Slack anymore, a part for quick questions/answers. Discussions on the performances should be done here, and not split into several places. Sorry but I try to be more efficient

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/lutteropp/NetRAX/issues/17#issuecomment-736334057, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGXB6WXIVUBJZ2ZH6RFNTTSSSX3DANCNFSM4UH3LXXA.

-- Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.exelixis-lab.org

lutteropp commented 3 years ago

I extra posted the link to the slack messages to avoid discussion at two places... But ok, I will repost all the figures and results here. Probably best to do it in a separate GitHub issue for each different dataset setup (small tree, small network, etc.)

But we should be aware of the following: By moving entirely to the GitHub issues, we are excluding the other lab members who are only in the Slack channel from the discussions.

lutteropp commented 3 years ago

Also, GitHub issues are very restrictive on supported file types and file sizes...

If you so much hate the exact link to the slack message, I'll upload the data and plots to Google Drive instead... >_>

lutteropp commented 3 years ago

Here is the link to the Google Drive folder containing all the experimental results so far, as well as all the plots created so far: https://drive.google.com/drive/folders/1-pAfJJu3eHJy8G_L7DNls-iLo54N6ItI?usp=sharing

I cannot upload all this data here directly. The GitHub issue complains about it. I'll try if it works at least for the pictures...

celinescornavacca commented 3 years ago

Way better 👍

lutteropp commented 3 years ago

Closing this issue here. Please use the issues https://github.com/lutteropp/NetRAX/issues/18 and https://github.com/lutteropp/NetRAX/issues/19 for discussing the results.

stamatak commented 3 years ago

I think excluding the others is okay, as we are going very much into the details here

On 01.12.20 11:58, Sarah Lutteropp wrote:

I extra posted the link to the slack messages to avoid discussion at two places... But ok, I will repost all the figures and results here. Probably best to do it in a separate GitHub issue for each different dataset setup (small tree, small network, etc.)

But we should be aware of the following: By moving entirely to the GitHub issues, we are excluding the other lab members who are only in the Slack channel from the discussions.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/lutteropp/NetRAX/issues/17#issuecomment-736367377, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGXB6XZFNLUZ3Q4HT23MLTSSS453ANCNFSM4UH3LXXA.

-- Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.exelixis-lab.org