Open lutteropp opened 3 years ago
Yes that is a valid question and the prior expectation we have.
On 06.12.20 03:37, Sarah Lutteropp wrote:
How does the number of partitions influence the number of inferred reticulations?
It is obvious that with LikelihoodType.BEST, network inference on an unpartitioned MSA will always lead to a tree.
However, it would be interesting to see how well NetRAX can recover reticulations in an unpartitioned MSA with LikelihoodType.AVERAGE...
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How does the number of partitions influence the number of inferred reticulations?
It is obvious that with LikelihoodType.BEST, network inference on an unpartitioned MSA will always lead to a tree.
However, it would be interesting to see how well NetRAX can recover reticulations in an unpartitioned MSA with LikelihoodType.AVERAGE... For this, I suggest an additional experiment where NetRAX is once run with and once without the partitions file.