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lvrcek / GNNome-assembly

Learning to untangle genome assembly with graph neural networks.
MIT License
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how to get NGA value? i didn't find the gff file of human chromosome #13

Closed songyu2022 closed 4 months ago

songyu2022 commented 1 year ago

Thanks for your work. I saw that you supply the NGA value in your paper, but i didn't find the gff file in your project. Can you tell me how to get it?

lvrcek commented 1 year ago

NGA50 value is based on the comparison of your assembly with the reference genome. You just need 2 FASTA files, no need for GFF. I computed these values with Quast: https://github.com/ablab/quast