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lws99 / qbb2023-answers

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Week 9 Feedback #10

Open dtaylo95 opened 11 months ago

dtaylo95 commented 11 months ago

Python script to run DE analysis

5.75/6

Exercise Points Possible Grade
Implementation of manual DE test 1 1
Manual DE test on all genes 1 1
Code to do FDR correction 1 1
Running PyDESeq2 on all genes 1 1
Overlap between methods 1 1
Code to produce volcano plot 1 0.75

This all looks great! Minor omission but we did want you to highlight genes with padj < 0.1 and log2FC > 1 on the volcano plot.

README.md with answers to questions

1/1

Exercise Points Possible Grade
Jaccard index overlap between methods 1 1

Output text files

2/2

Exercise Points Possible Grade
List of DE genes in manual test 1 1
List of DE genes in PyDESeq2 test 1 1

Pretty plots

1/1

Exercise Points Possible Grade
Exercise 2 Volcano plot 1 1

Grade

Total: 9.75/10

Really great work! Feel free to address the one small issue with the volcano plot and resubmit!

lws99 commented 11 months ago

Finished!

dtaylo95 commented 11 months ago

Regraded 12/13/2023

Current grade: 9.75/10

Updated the rubric above. Great work! Feel free to address the one small issue and resubmit for the full 10/10.