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embedding
Learning semantic embeddings for TF binding preferences directly from sequence
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Considerations from ENCODE meeting
#18
lzamparo
opened
6 years ago
1
Atlas QC work
#17
lzamparo
opened
6 years ago
3
Re-focus to start embedding ATAC-seq sub-peaks
#16
lzamparo
opened
6 years ago
2
Focus argument for improvement as interpretability
#15
lzamparo
opened
6 years ago
1
Fix visualization notebooks to use SequenceParser objects
#14
lzamparo
closed
6 years ago
1
Model visualization enhancements needed
#13
lzamparo
opened
6 years ago
1
Rc token map
#12
lzamparo
closed
6 years ago
0
Test Adam versus Nesterov momentum versus RMSprop
#11
lzamparo
opened
6 years ago
2
Re-write data processing code to use `dask.distributed` for serving data to models
#10
lzamparo
opened
6 years ago
1
Implement doc2vec style factor augmentation
#9
lzamparo
opened
6 years ago
1
Merge unigram words, code-words with their reverse complements
#8
lzamparo
closed
6 years ago
8
Turn samplers for contexts into factor-dependent parameters
#7
lzamparo
opened
6 years ago
0
Issue5
#6
lzamparo
closed
7 years ago
0
Fix DatasetReader to truly act as a generator for SELEX data
#5
lzamparo
closed
6 years ago
4
Still cannot train properly on the full SELEX data
#4
lzamparo
closed
7 years ago
3
Regularize loss function with k-mer based inverse distance prior
#3
lzamparo
opened
7 years ago
0
Can the model really learn??
#2
lzamparo
closed
7 years ago
4
Strange BrokenPipe / EOFError when using generate_dataset_parallel
#1
lzamparo
closed
7 years ago
3