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m-albert / fractal-ome-zarr-hcs-stitching

Fractal task(s) for registering and fusing OME-Zarr HCS using multiview-stitcher.
BSD 3-Clause "New" or "Revised" License
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Run Zenodo integration tests with GitHub CI #4

Closed nrepina closed 4 weeks ago

nrepina commented 1 month ago

Set up Github action for testing & data download from Zenodo via pooch + caching

nrepina commented 1 month ago

@jluethi @m-albert

Test datasets are now on Zenodo and ready to be added as integration tests!

See links below.

SearchFirst (ome-zarr): https://zenodo.org/records/12795788 Tiled (ome-zarr, with sparse fields): https://zenodo.org/records/12795605

If we need to re-generate the zarrs or test on tifs, the raw tifs used for input are also now publicly available: SearchFirst (tif): https://zenodo.org/records/12795729 Tiled (tif): https://zenodo.org/records/12794819

m-albert commented 1 month ago

This is awesome @nrepina !