Error message when Sally running line 945 - Annelida branch

[sadamowi]

Hi again Matt,

I am recording the below error message for our information. However, I will verify this by running everything again. Perhaps I skipped a line by accident at some point.

dfPairingResultsL1 <- (dfPairingResultsL1[,c("inGroupPairing","associatedInGroupBin","inGroupDist","inGroupDistx1.3",

• "medianLatAbs.x","latDelta","latMin.x","latMax.x","record_id.x",
• "binSize.x","phylum_taxID.x","phylum_name.x","class_taxID.x",
• "class_name.x","order_taxID.x","order_name.x","family_taxID.x",
• "family_name.x","subfamily_taxID.x","subfamily_name.x",
• "genus_taxID.x","genus_name.x","species_taxID.x","species_name.x",
• "trimmedNucleotides.x","medianLatMap.x","medianLon.x",
• "outGroupBin","outGroupDistance","record_id.y","binSize.y",
• "phylum_taxID.y","phylum_name.y","class_taxID.y",
• "class_name.y","order_taxID.y","order_name.y","family_taxID.y",
• "family_name.y","subfamily_taxID.y","subfamily_name.y",
• "genus_taxID.y","genus_name.y","species_taxID.y","species_name.y",
• "trimmedNucleotides.y")]) Error in [.data.frame(dfPairingResultsL1, , c("inGroupPairing", "associatedInGroupBin", : undefined columns selected

[sadamowi]

I got a similar error message when running line 962. Again, I will verify this by running the whole thing again.

[sadamowi]

I also got an error at line 980

dfPairingResultsL1L2 <- rbind(dfPairingResultsL1, dfPairingResultsL2) Error in rbind(deparse.level, ...) : numbers of columns of arguments do not match

[sadamowi]

I did NOT get these errors again when re-running the script. I believe these are OK, but I am leaving this issue up (but closed) in case this comes up again.