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m-orton / Evolutionary-Rates-Analysis-Pipeline

The purpose of this repository is to develop software pipelines in R that can perform large scale phylogenetics comparisons of various taxa found on the Barcode of Life Database (BOLD) API.
GNU General Public License v3.0
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Sally task - check p values #20

Closed sadamowi closed 7 years ago

sadamowi commented 7 years ago

I am opening this issue to remind me to check the binomial and Wilcoxon tests, as requested. I will close this issue after I have done that.

sadamowi commented 7 years ago

I have checked the p-values for your binomial test. These are correctly calculated based upon your number of successes and failures for each class and overall. I still need to check the Wilcoxon test.

sadamowi commented 7 years ago

Hi Jacqueline and Matt,

I see that this older issue is still open. Is this still something I should check, or have you checked this Jacqueline? (Thanks for confirming. I saw you two discussing the lines of code for the stats tests in another thread.)

Cheers, Sally

sadamowi commented 7 years ago

Hi Matt and Jacqueline,

I have checked the p-value calculator, using the outputted results for Mesostigmata. I used the outputted pairing results (from Server Run Jan 30th) to recalculate the p-value for the binomial test and the Wilcoxon test. I got the same results as were in the Pval tab in the Results Excel sheet. So, I think this test is being performed correctly, and so I will close this issue.

Cheers, Sally