search

m-orton / Evolutionary-Rates-Analysis-Pipeline

The purpose of this repository is to develop software pipelines in R that can perform large scale phylogenetics comparisons of various taxa found on the Barcode of Life Database (BOLD) API.
GNU General Public License v3.0
7 stars 1 forks source link

Sally got an error on line 1610 #21

Closed sadamowi closed 7 years ago

sadamowi commented 7 years ago

Hi Matt,

I also got an error when plotting, using the block of code starting on line 1610.

plot_ly(dfPairingResultsL1L2, lat = medianLatMap.x, lon = medianLon.x, text = hover,

Error in plot_ly(dfPairingResultsL1L2, lat = medianLatMap.x, lon = medianLon.x, : object 'medianLatMap.x' not found

plot_ly(dfPairingResultsL1L2, lat = medianLatMap.x, lon = medianLon.x, text = hover,

  • color = class_name.x, mode = "markers", type = 'scattergeo') %>%
  • layout(title = paste0(mapTitle) , geo = mapLayout)

Error in plot_ly(dfPairingResultsL1L2, lat = medianLatMap.x, lon = medianLon.x, : object 'medianLatMap.x' not found

m-orton commented 7 years ago

Hi Sally, upon updating R versions, I am now getting this error as well. I will let you know if I find a solution.

Matt

sadamowi commented 7 years ago

Update when running revised Annelida code using very very secure dishes.

Line is now 1634.

plot_ly(dfPairingResultsL1L2, lat = medianLatMap, lon = medianLon, text = hoverText,

  • color = as.ordered(inGroupPairing), colors = "Spectral", mode = "markers+lines", type = 'scattergeo') %>%
  • layout(title = paste0(mapTitle) , geo = mapLayout)

Error in plot_ly(dfPairingResultsL1L2, lat = medianLatMap, lon = medianLon, : object 'hoverText' not found

m-orton commented 7 years ago

Hi Sally, I think I was able to fix the plotly command by adding a new line of code and changing the variables of the plotly command slightly.

Best Regards, Matt

m-orton commented 7 years ago

Should mention that its this command at 1649: attach(dfPairingResultsL1L2)

Best regards, Matt

m-orton commented 7 years ago

I think Im going to close this issue since I have fixed this specific error with the plot,