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m-wierzba / cat-container

This container allows to run the standalone, compiled version of the Computational Anatomy Toolbox (CAT), which is an extension to SPM software.
MIT License
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Crash with permission denied #7

Closed mih closed 4 years ago

mih commented 4 years ago 
% singularity run --cleanenv cat.simg -b /batch/cat_standalone_segment.txt test_t1w.nii.gz

logs contains:

  Create initial surface                                          
------------------------------------------------------------------------
CAT Preprocessing error for R_DNO_CwTt-test_t1w:
------------------------------------------------------------------------
/bin/sh: 1: /code/SPM/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/CAT.glnx86/CAT_Surf2Sphere: Permission denied

Possibly a missing execution bit?

Full log attached: cat_1592211378.log

m-wierzba commented 4 years ago

This is done here: 68225f8f1015fd2bc386bd8d7f843410a16b56f5.