mSorok / NaturalProductsOnline

Website code for COCONUT
https://coconut.naturalproducts.net/
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Description of COCONUT Mongo db #75

Closed lz100 closed 2 years ago

lz100 commented 2 years ago

Thank you for developing the COCONUT database. I have downloaded the mongo dump and would like to dig for some data. Do you know where I can find information about the collections and fields in each collection, and maybe some simple description of each field?

Something like the ChEMBL, not necessarily a graph, maybe a table will be very useful: https://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/latest/chembl_29_schema.png

lz100 commented 2 years ago

Something similar to the Table 2 in the original paper will be great, but since you have updated the db many times and that table is only for one collection, updated description with all tables will be much appreciated.

mSorok commented 2 years ago

The latest field description can be found here: https://doi.org/10.6084/m9.figshare.16843573.v2

Note that this field description is only for the uniqueNaturalProduct collection. Other collections in the database are support mainly and do not contain information that is not in uniqueNaturalProduct