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ma-compbio / Higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
MIT License
78 stars 11 forks source link

I cannot install Higashi through conda. My computer doesn't have gpu. #17

Closed EddieLv closed 2 years ago

EddieLv commented 2 years ago

My system is linux without gpu,

  1. create a conda env named higashi
  2. conda install python==3.9
  3. conda install pytorch torchvision torchaudio cpuonly -c pytorch
  4. conda install -c ruochiz higashi Here comes the error: 3c0ffdc6cc5b09a15795d2fffcfe592
ruochiz commented 2 years ago

Thank you for your feedback. I will look into it, it does seem that the conda build only works for some of the machines (2 out of 3 machines that I tested on can install the package, the other one failed without any detailed error information). Meanwhile, could you try if you can install the package through the git clone + python setup.py way? Thanks.

EddieLv commented 2 years ago

Thanks for your reply. I successfully installed the Higahi through the git clone way. 1.create a conda env named higashi 2.conda install python==3.9 3.conda install pytorch torchvision torchaudio cpuonly -c pytorch 4.python setup.py install And I can also run Higashi in jupyter notebook.

ruochiz commented 2 years ago

Thank you for testing! I will try to make the conda install work and more compatible.