ERROE when run process.py: no config file

ma-compbio / Higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

MIT License

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ERROE when run process.py: no config file #44

Closed shinohara-xiao closed 1 year ago

shinohara-xiao commented 1 year ago

Hi ! When I'm running Process.py python Process.py I got an error like this: No such file or directory: './config.JSON' Do I need to construct the file on my own or do I miss some important steps that used to generate the JSON file ? How can I get this JSON file ?

Thank you very much.

ruochiz commented 1 year ago

It's something you need to construct on your own, which contains all the information the program need such as file location, genome reference etc. See wiki page here: https://github.com/ma-compbio/Higashi/wiki/Configure-the-parameters

And also tutorials on the wiki page for examples of that