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maartenmennes / ICA-AROMA

ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Apache License 2.0
92 stars 53 forks source link

Docker container in Dockerhub #5

Open glatard opened 8 years ago

glatard commented 8 years ago

It would be very useful if you could create an automated build of the Docker container on Dockerhub (https://hub.docker.com). It takes only a few clicks and it's free. Other people cannot do it because it requires permissions to your Github account.

maartenmennes commented 7 years ago

Given that the official version is in Raimon's github account, how would I go about creating this? In the docker automated build I can only choose my own repositories.

glatard commented 7 years ago

I guess Raimon has to do that then.

jlhanson5 commented 6 years ago

A slightly related question, there looks to be a Dockerfile in the current repo... but I don't see guidance on the specific syntax? Is it just the same basic command line inputs?

I kept trying: python2.7 ~/Volumes/Hanson/Training_Resources/ICA-AROMA/ica-aroma-via-docker.py -in ~/Volumes/Hanson/Duke_PAC/proc/140313_18263/fmri/rest/ICA_AROMA/20140313_18263_REST_LAS_st_mcfr_brain.nii.gz -out ~/Volumes/Hanson/Duke_PAC/proc/140313_18263/fmri/rest/ICA_AROMA/ -a ~/Volumes/Hanson/Duke_PAC/proc/140313_18263/fmri/rest/ICA_AROMA/func2struct.mat -w ~/Volumes/Hanson/Duke_PAC/proc/140313_18263/fmri/rest/ICA_AROMA/my_nonlinear_transf.nii.gz -mc ~/Volumes/Hanson/Duke_PAC/proc/140313_18263/fmri/rest/20140313_18263_REST_LAS_st_mcfr_brain_norm.mat

but ran into different various issues. Any thoughts are greatly appreciated!

maartenmennes commented 6 years ago

I'm currently still a noob when it comes to docker. This function was added by @chrisfilo - perhaps he can chime in?

jlhanson5 commented 6 years ago

Yes, I am a super noob w/ Docker too... so any assistance is greatly appreciated. I can pull the docker image, but can't figure out the specific arguments that are needed or what the syntax is, etc. Thanks much!

chrisgorgo commented 6 years ago

I did not put this container on Docker Hub so I am not sure what are you pulling. You would need to specify which container are you pulling (or building), what command you are trying to run, and what errors (full trace) you are getting for people to be able to help you.

jlhanson5 commented 6 years ago

That might explain it, I was trying to use ica-aroma-via-docker.py. I also tried to use this docker container: https://hub.docker.com/r/mcin/ica-aroma/