parallel_accumulators error in flex_spec vignette chunk

[bbolker]

It's possible that I just failed to synchronize something, but I did try pulling/installing first. This is MacPan v 0.0.20.1

label: add_rates
Quitting from lines 488-512 (flex_specs.rmd) 
Error in parallel_accumulators(model, state_patterns) : 
  Parallel accumulators are now handled through outflow

(I labeled the code chunks in a recent commit)

R Under development (unstable) (2021-11-15 r81191)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Pop!_OS 21.04

Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.13.so

other attached packages:
[1] dplyr_1.0.7               McMasterPandemic_0.0.20.1
[3] RcppEigen_0.3.3.99.0      TMB_1.7.22               
[5] rmarkdown_2.11           

loaded via a namespace (and not attached):
 [1] shape_1.4.6         diagram_1.6.5       tidyselect_1.1.1   
 [4] xfun_0.28           bslib_0.3.1         purrr_0.3.4        
 [7] splines_4.2.0       lattice_0.20-45     testthat_3.1.0     
[10] colorspace_2.0-2    vctrs_0.3.8         generics_0.1.1     
[13] htmltools_0.5.2     stats4_4.2.0        yaml_2.2.1         
[16] utf8_1.2.2          rlang_0.4.12        jquerylib_0.1.4    
[19] pillar_1.6.4        glue_1.5.1          DBI_1.1.1          
[22] semver_0.2.0        foreach_1.5.1       lifecycle_1.0.1    
[25] stringr_1.4.0       munsell_0.5.0       gtable_0.3.0       
[28] bdsmatrix_1.3-4     mvtnorm_1.1-3       codetools_0.2-18   
[31] evaluate_0.14       knitr_1.36          forcats_0.5.1      
[34] tzdb_0.2.0          fastmap_1.1.0       fansi_0.5.0        
[37] Rcpp_1.0.7          readr_2.1.0         scales_1.1.1       
[40] fastmatrix_0.3-8196 jsonlite_1.7.2      hms_1.1.1          
[43] ggplot2_3.3.5       digest_0.6.28       stringi_1.7.6      
[46] numDeriv_2016.8-1.1 grid_4.2.0          tools_4.2.0        
[49] bbmle_1.0.24        magrittr_2.0.1      sass_0.4.0         
[52] tibble_3.1.6        tidyr_1.1.4         crayon_1.4.2       
[55] pkgconfig_2.0.3     MASS_7.3-54         ellipsis_0.3.2     
[58] Matrix_1.3-4        assertthat_0.2.1    iterators_1.0.13   
[61] R6_2.5.1            compiler_4.2.0     

[stevencarlislewalker]

Fixed with https://github.com/mac-theobio/McMasterPandemic/commit/85e6f71f6e983e202ef9a3a3551da980ac86db8c

[stevencarlislewalker]

Thanks for reminding me to get back to this document @bbolker!