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McMasterPandemic
SEIR+ model
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Summary Statistics in Guide and Software
#233
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stevencarlislewalker
opened
2 years ago
stevencarlislewalker
commented
2 years ago
[x] description of kernel methods in
https://canmod.github.io/macpan-book/examples.html#hello-world-simulating-an-sir-model
[x] Normalized parameter time-series methods --
https://github.com/mac-theobio/McMasterPandemic/blob/8b1a0373f9b9ba88c58dc32e8188157f6a2a8078/R/flexmodel_parameters.R#L173
[ ] Clean up the description
[ ] SIR example with time-varying beta
[x] Macpan base with time-varying beta
[x] Vaccination model with time-varying beta
[x] Method to get normalized numbers of susceptibles with pheno-het if necessary
[x] Method to run cohort simulation for obtaining the kernel (i.e. force of infection)
[x] Method for putting together normalized susceptibles, kernel, and normalized time-varying beta to get R0