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macaodha / batdetect2

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Fine tuning guidance #19

Open MatisPatel opened 1 year ago

MatisPatel commented 1 year ago

Heya, Currently the readme link to finetuning goes to a missing doc. (https://github.com/macaodha/batdetect2/blob/main/bat_detect/finetune/readme.md)

Could you point me to the right place?

macaodha commented 1 year ago

Hi. Looks like it was just a typo in the readme. I have fixed it now so it points to the correct place.

Note however, that the finetuning code currently needs to be fixed. See the warning in the readme.

MatisPatel commented 1 year ago

okay great thanks! Do you know what the issue is I can try having a look. We are collecting a lot of bat call data around hull and i just wanted to see how much we could improve the predictions by annotating some of the data and finetuning.

Also not to derail the issue but is there a flag to make the output the full probabilities for each species rather than just the highest?

macaodha commented 1 year ago

The finetuning code just needs to be updated to work with the newest API. We will hopefully get to that soon.

RE annotating your own data. I might be worth checking out this new paper from our team. The outputs should be fully compatible with this codebase. The code will also be online soon. https://arxiv.org/abs/2308.12688

Can you make a separate issue about your second request so we can keep things organized.