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macarthur-lab / clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
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should code be moved to a separate github repo from the data? #29

Closed bw2 closed 7 years ago

bw2 commented 7 years ago

In https://github.com/macarthur-lab/clinvar/issues/27 , @raymond301 suggested putting the clinvar data in a separate github repo from the code.

It seems simpler to me to keep everything in one place. Does anybody else have a preference on this?

ericminikel commented 7 years ago

I like all one place too

gpcr commented 7 years ago

I prefer all in one place

raymond301 commented 7 years ago

I guess, I'm the odd one. I just don't see a purpose in keeping the precomputed results files, with the code used to create those files. If you run the code, it just overwrites them....if you work on the code, they're just in the way.

bw2 commented 7 years ago

The directory structure is going back to separate src and output directories, so should help keep the clutter down. Also, next time I work on the code, I'll move the intermediate output files for the pipeline to a separate output dir so they're not mixed in with the code.