Get allele counts/frequencies per ethnicity and sex in autosomes

macarthur-lab / gnomad_browser

gnomAD browser pre-ASHG 2018

MIT License

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Get allele counts/frequencies per ethnicity and sex in autosomes #134

Closed mvysotskiy closed 5 years ago

mvysotskiy commented 6 years ago

We have the VCFs and we see that the X-chromosome variants have a field like AF_EAS_Male, which includes both sex and ethnicity, but the autosomes only have per-sex and per-ethnicity frequencies. We would be interested in seeing these combined statistic for the other chromosomes as well.

gtiao commented 6 years ago

We'll be releasing these as part of the upcoming 2.1 release, so look for these in the coming weeks!

nawatts commented 5 years ago

With the release of gnomAD 2.1, this information is available in the VCFs and in the browser.