macarthur-lab / gnomad_browser

gnomAD browser pre-ASHG 2018
MIT License
33 stars 16 forks source link

Filtered variants (e.g. AC0) missing from Viewing in Table track #82

Closed konradjk closed 6 years ago

konradjk commented 6 years ago

To reproduce:

nawatts commented 6 years ago

It looks like the "Viewing in table" track filters out variants with an allele frequency of 0 https://github.com/macarthur-lab/gnomadjs/blob/3816f2be5f10e4d2ae6e8430ca19695f3637e614/packages/track-navigator/src/Navigator.js#L121

while the track above renders them https://github.com/macarthur-lab/gnomadjs/blob/3816f2be5f10e4d2ae6e8430ca19695f3637e614/packages/track-variant/src/index.js#L154-L166

Filtered variants with allele frequency > 0 do appear in the "Viewing in table" track

screen shot 2018-05-07 at 5 56 19 pm
nawatts commented 6 years ago

Issue moved to macarthur-lab/gnomadjs#51