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macarthur-lab
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matchbox
matchbox server for the Matchmaker Exchange
BSD 3-Clause "New" or "Revised" License
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Metrics endpoint unreliable
#58
hanars
closed
5 years ago
0
json message returned from delete requests is malformed
#57
northwestwitch
opened
5 years ago
0
It also gives error (mvn version installation)
#56
DSRYU
closed
5 years ago
9
Fix mockito dependency and reference version
#55
northwestwitch
closed
5 years ago
0
java.io.IOException: Server returned HTTP response code: 400 for URL: http://gnomad-api.broadinstitute.org
#54
northwestwitch
opened
5 years ago
0
Error while deploying using Docker (both methods)
#53
northwestwitch
closed
5 years ago
6
Dev vs Master
#52
harindra-a
closed
6 years ago
0
Please help me solve "mvn install error"
#51
DSRYU
closed
7 years ago
7
Make matchbox natively HTTPS
#50
harindra-a
closed
7 years ago
2
update README with note on updating Java keystone for https
#49
harindra-a
closed
5 years ago
0
open source matchbox
#48
harindra-a
closed
7 years ago
2
Fix tests to run and add more tests
#47
harindra-a
closed
7 years ago
0
update README in prep for open sourcing
#46
harindra-a
closed
7 years ago
1
/patient/view endpoint should not show emptyFieldsRemovedJson
#45
harindra-a
closed
5 years ago
0
Fix metrics endpoint bug: double counting some genes and phenotypes
#44
harindra-a
closed
7 years ago
0
Add disclaimer to API result
#43
harindra-a
closed
7 years ago
0
matchbox publication
#42
harindra-a
closed
5 years ago
0
Add match algorithm description to MME ga4gh page
#41
harindra-a
closed
7 years ago
0
Slack message get's sent out when an internal match happens as well (this means when a seqr-user searches MME and finds matches)
#40
harindra-a
closed
7 years ago
0
Family page shows all exports now and dates. So seqr-users can see who was submitted and when
#39
harindra-a
closed
7 years ago
0
Made the gene ID and phenotype ID link out to their definitions. (This was a request from Elise and later Monica)
#38
harindra-a
closed
7 years ago
0
The MME search page will search with all submitted individuals. It will use the newest submission of each.
#37
harindra-a
closed
7 years ago
0
The submitter now can deselect phenotypes they don't want to submit (ex: generic phenotypes that might lead to noise). This came up in discussions with @tmullen & Gleeson
#36
harindra-a
closed
7 years ago
0
The MME result ENSML gene IDs now have links to gene information so you can see the gene ID and other information on the gene. So do the result HPO terms. They link out to ontobee.
#35
harindra-a
closed
7 years ago
0
Now Phenotype listings (in the add to MME page) have the full HPO descriptions (vs just the HPO term). This was a point brought up by @evalkanas and @mhwojcik)
#34
harindra-a
closed
7 years ago
0
Added PI name to primary MME contact at Broad.Example: Sam Baxter (data owner: Eric Pierce) (this is a request from Nara, and discussed with Heidi et al)
#33
harindra-a
closed
7 years ago
0
Updated MME match/add UI wording (thanks @mhwojcik, @evalkanas)
#32
harindra-a
closed
7 years ago
0
Added the Broad legal disclaimer. This can be accessed outside of seqr login, so we can link to this from CMG page if needed @hayley
#31
harindra-a
closed
7 years ago
0
Updated API, UI, submission code: to now submit only 1 affected individual per family (while seqr-users can still submit another if needed)
#30
harindra-a
closed
7 years ago
0
Changed contact institution to "Broad Center for Mendelian Genomics"
#29
harindra-a
closed
7 years ago
0
The multiple affected families submission
#28
harindra-a
closed
7 years ago
1
Change the duel query into 1 OR
#27
harindra-a
opened
7 years ago
0
Have a generic MME error
#26
harindra-a
opened
7 years ago
0
Patient.java needs logging
#25
harindra-a
closed
5 years ago
0
Slack: add what information was sent through
#24
harindra-a
closed
5 years ago
0
Setup communication among distributed developers
#23
harindra-a
closed
5 years ago
0
Setup up travis for automated testing
#22
harindra-a
opened
7 years ago
0
DB password
#21
harindra-a
closed
7 years ago
1
Keep a record of deleted patients in matchbox as well
#20
harindra-a
opened
7 years ago
0
HPO terms should have mouseover that show their descriptions
#19
harindra-a
closed
5 years ago
0
Gene IDs in results
#18
harindra-a
closed
5 years ago
0
The "last export" label in the family_home page
#17
harindra-a
closed
7 years ago
0
Build a local Java keystone and add Garvan certificates
#16
harindra-a
closed
7 years ago
1
Change number of genes in score algorithm to zygosity
#15
harindra-a
closed
7 years ago
0
Same patient matched to itself should return score of 1
#14
harindra-a
opened
7 years ago
0
Stop matchbox from sending back same patient as a match result
#13
harindra-a
closed
7 years ago
0
Add disclaimers
#12
harindra-a
closed
7 years ago
1
Add a page to the family page in seqr that shows all incoming requests that matched to that family
#11
harindra-a
closed
5 years ago
0
Add a note to the seqr family page that shows that it has been submitted to MME
#10
harindra-a
closed
7 years ago
1
Email from Francois of a 400 error they are getting
#9
harindra-a
closed
7 years ago
2
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