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search_for_boost() fails to detect boost #20

Closed skleff1994 closed 4 years ago

skleff1994 commented 4 years ago

I am trying to build my workspace on Ubuntu 18.04 with python 2.7 but CMake cannot find boost somehow (search_for_boost() fails) : 

sebastien@dekalb:~/devel_test2/workspace$ catkin build
--------------------------------------------------------------------------
Profile:                     default
Extending:          [cached] /opt/ros/melodic
Workspace:                   /home/sebastien/devel_test2/workspace
--------------------------------------------------------------------------
Build Space:        [exists] /home/sebastien/devel_test2/workspace/build
Devel Space:        [exists] /home/sebastien/devel_test2/workspace/devel
Install Space:      [unused] /home/sebastien/devel_test2/workspace/install
Log Space:          [exists] /home/sebastien/devel_test2/workspace/logs
Source Space:       [exists] /home/sebastien/devel_test2/workspace/src
DESTDIR:            [unused] None
--------------------------------------------------------------------------
Devel Space Layout:          linked
Install Space Layout:        None
--------------------------------------------------------------------------
Additional CMake Args:       None
Additional Make Args:        None
Additional catkin Make Args: None
Internal Make Job Server:    True
Cache Job Environments:      False
--------------------------------------------------------------------------
Whitelisted Packages:        None
Blacklisted Packages:        None
--------------------------------------------------------------------------
Workspace configuration appears valid.
--------------------------------------------------------------------------
[build] Found '30' packages in 0.0 seconds.                                                                                                                                                                                              
[build] Package table is up to date.                                                                                                                                                                                                     
Starting  >>> iiwa_fri_client                                                                                                                                                                                                            
Starting  >>> mpi_cmake_modules                                                                                                                                                                                                          
Finished  <<< mpi_cmake_modules                         [ 0.2 seconds ]                                                                                                                                                                  
Starting  >>> ci_example_python                                                                                                                                                                                                          
Starting  >>> dg_demos                                                                                                                                                                                                                   
Starting  >>> dg_tools                                                                                                                                                                                                                   
Starting  >>> mpi_cpp_tools                                                                                                                                                                                                              
Starting  >>> pinocchio_bullet                                                                                                                                                                                                           
Starting  >>> pybind11_catkin                                                                                                                                                                                                            
Starting  >>> robot_properties_iiwa                                                                                                                                                                                                      
Starting  >>> robot_properties_quadruped                                                                                                                                                                                                 
Starting  >>> robot_properties_solo                                                                                                                                                                                                      
Starting  >>> robot_properties_stuggihop                                                                                                                                                                                                 
Starting  >>> robot_properties_teststand                                                                                                                                                                                                 
Starting  >>> yaml_cpp_catkin                                                                                                                                                                                                            
Finished  <<< iiwa_fri_client                           [ 0.3 seconds ]                                                                                                                                                                  
Finished  <<< yaml_cpp_catkin                           [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< dg_demos                                  [ 0.3 seconds ]                                                                                                                                                                  
Finished  <<< pybind11_catkin                           [ 0.2 seconds ]                                                                                                                                                                  
Starting  >>> ci_example_cpp                                                                                                                                                                                                             
Starting  >>> real_time_tools                                                                                                                                                                                                            
Starting  >>> shared_memory                                                                                                                                                                                                              
Finished  <<< robot_properties_solo                     [ 0.2 seconds ]                                                                                                                                                                  
_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Errors     << dg_tools:make /home/sebastien/devel_test2/workspace/logs/dg_tools/build.make.019.log                                                                                                                                       
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/data/upsampler.hpp:20,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/data/upsampler.cpp:6:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/data/upsampler.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/control/calibrator.hpp:21,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/control/calibrator.cpp:21:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/control/calibrator.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/ComImpedanceControl/reactive_lqr_controller.hpp:24,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/com_impedance_control/reactive_lqr_controller.cpp:8:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/com_impedance_control/reactive_lqr_controller.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/data/history_recorder.hpp:20,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/data/history_recorder.cpp:6:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/data/history_recorder.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/test_stand_control/power_jump.hpp:19,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/test_stand_control/power_jump.cpp:4:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/test_stand_control/power_jump.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/control/control_pd.hpp:23,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/control/control_pd.cpp:22:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/control/control_pd.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/ComImpedanceControl/ComImpedanceController.hpp:27,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/com_impedance_control/com_impedance_controller.cpp:6:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/com_impedance_control/com_impedance_controller.cpp.o] Error 1
In file included from /opt/openrobots/include/dynamic-graph/signal-time-dependent.h:8:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/include/dg_tools/data/previous_value.hpp:20,
                 from /home/sebastien/devel_test2/workspace/src/catkin/dg_control/dg_tools/src/data/previous_value.cpp:6:
/opt/openrobots/include/dynamic-graph/signal.h:13:10: fatal error: boost/bind.hpp: No such file or directory
 #include <boost/bind.hpp>
          ^~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/CMakeFiles/dg_tools.dir/data/previous_value.cpp.o] Error 1
make[1]: *** [src/CMakeFiles/dg_tools.dir/all] Error 2
make: *** [all] Error 2
cd /home/sebastien/devel_test2/workspace/build/dg_tools; catkin build --get-env dg_tools | catkin env -si  /usr/bin/make --jobserver-fds=6,7 -j; cd -
.........................................................................................................................................................................................................................................
Failed     << dg_tools:make                             [ Exited with code 2 ]                                                                                                                                                           
Failed    <<< dg_tools                                  [ 0.5 seconds ]                                                                                                                                                                  
Abandoned <<< ati_ft_sensor                             [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< blmc_drivers                              [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< ddp_iiwa                                  [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< rqt_dynamic_graph                         [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< time_series                               [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< robot_interfaces                          [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< vicon_sdk                                 [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< dg_vicon_sdk                              [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< blmc_robots                               [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< dynamic_graph_manager                     [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< dg_blmc_robots                            [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< dg_turtlesim                              [ Unrelated job failed ]                                                                                                                                                         
Abandoned <<< iiwa_robot                                [ Unrelated job failed ]                                                                                                                                                         
Finished  <<< robot_properties_quadruped                [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< robot_properties_stuggihop                [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< robot_properties_iiwa                     [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< pinocchio_bullet                          [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< robot_properties_teststand                [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< mpi_cpp_tools                             [ 0.2 seconds ]                                                                                                                                                                  
Finished  <<< ci_example_python                         [ 0.2 seconds ]                                                                                                                                                                  
_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Errors     << ci_example_cpp:make /home/sebastien/devel_test2/workspace/logs/ci_example_cpp/build.make.011.log                                                                                                                           
In file included from /opt/ros/melodic/include/ros/ros.h:38:0,
                 from /home/sebastien/devel_test2/workspace/src/catkin/examples/ci_example/ci_example_cpp/include/ci_example_cpp/rosparameters_configuration.hpp:11,
                 from /home/sebastien/devel_test2/workspace/src/catkin/examples/ci_example/ci_example_cpp/src/rosparameters_configuration.cpp:8:
/opt/ros/melodic/include/ros/time.h:58:10: fatal error: boost/math/special_functions/round.hpp: No such file or directory
 #include <boost/math/special_functions/round.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/ci_example.dir/src/rosparameters_configuration.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /usr/include/yaml-cpp/node/node.h:16:0,
                 from /usr/include/yaml-cpp/yaml.h:16,
                 from /home/sebastien/devel_test2/workspace/src/catkin/examples/ci_example/ci_example_cpp/include/ci_example_cpp/file_configuration.hpp:11,
                 from /home/sebastien/devel_test2/workspace/src/catkin/examples/ci_example/ci_example_cpp/src/file_configuration.cpp:8:
/usr/include/yaml-cpp/node/ptr.h:11:10: fatal error: boost/shared_ptr.hpp: No such file or directory
 #include <boost/shared_ptr.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/ci_example.dir/src/file_configuration.cpp.o] Error 1
make[1]: *** [CMakeFiles/ci_example.dir/all] Error 2
make: *** [all] Error 2
cd /home/sebastien/devel_test2/workspace/build/ci_example_cpp; catkin build --get-env ci_example_cpp | catkin env -si  /usr/bin/make --jobserver-fds=6,7 -j; cd -
.........................................................................................................................................................................................................................................
Failed     << ci_example_cpp:make                       [ Exited with code 2 ]                                                                                                                                                           
Failed    <<< ci_example_cpp                            [ 0.3 seconds ]                                                                                                                                                                  
_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Errors     << real_time_tools:cmake /home/sebastien/devel_test2/workspace/logs/real_time_tools/build.cmake.011.log                                                                                                                       
CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:21 (search_for_boost)

CMake Error at /usr/share/cmake-3.10/Modules/FindBoost.cmake:1947 (message):
  Unable to find the requested Boost libraries.

  Unable to find the Boost header files.  Please set BOOST_ROOT to the root
  directory containing Boost or BOOST_INCLUDEDIR to the directory containing
  Boost's headers.
Call Stack (most recent call first):
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:21 (search_for_boost)

CMake Error at /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:96 (MESSAGE):
  Failed to detect Boost with the following components:

Call Stack (most recent call first):
  CMakeLists.txt:21 (search_for_boost)

cd /home/sebastien/devel_test2/workspace/build/real_time_tools; catkin build --get-env real_time_tools | catkin env -si  /usr/bin/cmake /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/real_time_tools --no-warn-unused-cli -DCATKIN_DEVEL_PREFIX=/home/sebastien/devel_test2/workspace/devel/.private/real_time_tools -DCMAKE_INSTALL_PREFIX=/home/sebastien/devel_test2/workspace/install; cd -
.........................................................................................................................................................................................................................................
Failed     << real_time_tools:cmake                     [ Exited with code 1 ]                                                                                                                                                           
Failed    <<< real_time_tools                           [ 0.8 seconds ]                                                                                                                                                                  
_________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Errors     << shared_memory:cmake /home/sebastien/devel_test2/workspace/logs/shared_memory/build.cmake.011.log                                                                                                                           
CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Warning at /usr/share/cmake-3.10/Modules/FindBoost.cmake:567 (message):
  Imported targets and dependency information not available for Boost version
  (all versions older than 1.33)
Call Stack (most recent call first):
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:907 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.10/Modules/FindBoost.cmake:1558 (_Boost_MISSING_DEPENDENCIES)
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Error at /usr/share/cmake-3.10/Modules/FindBoost.cmake:1947 (message):
  Unable to find the requested Boost libraries.

  Unable to find the Boost header files.  Please set BOOST_ROOT to the root
  directory containing Boost or BOOST_INCLUDEDIR to the directory containing
  Boost's headers.
Call Stack (most recent call first):
  /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:93 (FIND_PACKAGE)
  CMakeLists.txt:12 (search_for_boost)

CMake Error at /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/mpi_cmake_modules/cmake/boost.cmake:96 (MESSAGE):
  Failed to detect Boost with the following components:

Call Stack (most recent call first):
  CMakeLists.txt:12 (search_for_boost)

cd /home/sebastien/devel_test2/workspace/build/shared_memory; catkin build --get-env shared_memory | catkin env -si  /usr/bin/cmake /home/sebastien/devel_test2/workspace/src/catkin/core_robotics/shared_memory --no-warn-unused-cli -DCATKIN_DEVEL_PREFIX=/home/sebastien/devel_test2/workspace/devel/.private/shared_memory -DCMAKE_INSTALL_PREFIX=/home/sebastien/devel_test2/workspace/install; cd -
.........................................................................................................................................................................................................................................
Failed     << shared_memory:cmake                       [ Exited with code 1 ]                                                                                                                                                           
Failed    <<< shared_memory                             [ 0.9 seconds ]                                                                                                                                                                  
[build] Summary: 13 of 30 packages succeeded.                                                                                                                                                                                            
[build]   Ignored:   None.                                                                                                                                                                                                               
[build]   Warnings:  None.                                                                                                                                                                                                               
[build]   Abandoned: 13 packages were abandoned.                                                                                                                                                                                         
[build]   Failed:    4 packages failed.                                                                                                                                                                                                  
[build] Runtime: 2.7 seconds total.

I checked the following : 

sebastien@dekalb:~/devel_test2/workspace$ ldconfig -p |grep boost
    libboost_wserialization.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_wserialization.so.1.65.1
    libboost_wserialization.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_wserialization.so
    libboost_wave.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_wave.so.1.65.1
    libboost_wave.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_wave.so
    libboost_unit_test_framework.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.65.1
    libboost_unit_test_framework.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so
    libboost_type_erasure.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_type_erasure.so.1.65.1
    libboost_type_erasure.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_type_erasure.so
    libboost_timer.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.65.1
    libboost_timer.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_timer.so
    libboost_thread.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.65.1
    libboost_thread.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_thread.so
    libboost_system.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_system.so.1.65.1
    libboost_system.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_system.so
    libboost_stacktrace_noop.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_noop.so.1.65.1
    libboost_stacktrace_noop.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_noop.so
    libboost_stacktrace_basic.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_basic.so.1.65.1
    libboost_stacktrace_basic.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_basic.so
    libboost_stacktrace_backtrace.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_backtrace.so.1.65.1
    libboost_stacktrace_backtrace.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_backtrace.so
    libboost_stacktrace_addr2line.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_addr2line.so.1.65.1
    libboost_stacktrace_addr2line.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_stacktrace_addr2line.so
    libboost_signals.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_signals.so.1.65.1
    libboost_signals.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_signals.so
    libboost_serialization.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.65.1
    libboost_serialization.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_serialization.so
    libboost_regex.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.65.1
    libboost_regex.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_regex.so
    libboost_random.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_random.so.1.65.1
    libboost_random.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_random.so
    libboost_python3-py36.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_python3-py36.so.1.65.1
    libboost_python3-py36.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_python3-py36.so
    libboost_python-py27.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.65.1
    libboost_python-py27.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_python-py27.so
    libboost_program_options.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.65.1
    libboost_program_options.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_program_options.so
    libboost_prg_exec_monitor.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_prg_exec_monitor.so.1.65.1
    libboost_prg_exec_monitor.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_prg_exec_monitor.so
    libboost_numpy3-py36.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_numpy3-py36.so.1.65.1
    libboost_numpy3-py36.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_numpy3-py36.so
    libboost_numpy-py27.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_numpy-py27.so.1.65.1
    libboost_numpy-py27.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_numpy-py27.so
    libboost_mpi_python3-py36.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi_python3-py36.so.1.65.1
    libboost_mpi_python3-py36.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi_python3-py36.so
    libboost_mpi_python-py27.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi_python-py27.so.1.65.1
    libboost_mpi_python-py27.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi_python-py27.so
    libboost_mpi.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi.so.1.65.1
    libboost_mpi.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_mpi.so
    libboost_math_tr1l.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1l.so.1.65.1
    libboost_math_tr1l.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1l.so
    libboost_math_tr1f.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1f.so.1.65.1
    libboost_math_tr1f.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1f.so
    libboost_math_tr1.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1.so.1.65.1
    libboost_math_tr1.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_tr1.so
    libboost_math_c99l.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99l.so.1.65.1
    libboost_math_c99l.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99l.so
    libboost_math_c99f.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99f.so.1.65.1
    libboost_math_c99f.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99f.so
    libboost_math_c99.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99.so.1.65.1
    libboost_math_c99.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_math_c99.so
    libboost_log_setup.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_log_setup.so.1.65.1
    libboost_log_setup.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_log_setup.so
    libboost_log.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_log.so.1.65.1
    libboost_log.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_log.so
    libboost_locale.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_locale.so.1.65.1
    libboost_locale.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_locale.so
    libboost_iostreams.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.65.1
    libboost_iostreams.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_iostreams.so
    libboost_graph_parallel.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_graph_parallel.so.1.65.1
    libboost_graph_parallel.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_graph_parallel.so
    libboost_graph.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_graph.so.1.65.1
    libboost_graph.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_graph.so
    libboost_filesystem.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.65.1
    libboost_filesystem.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_filesystem.so
    libboost_fiber.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_fiber.so.1.65.1
    libboost_fiber.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_fiber.so
    libboost_date_time.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.65.1
    libboost_date_time.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_date_time.so
    libboost_coroutine.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_coroutine.so.1.65.1
    libboost_coroutine.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_coroutine.so
    libboost_context.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_context.so.1.65.1
    libboost_context.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_context.so
    libboost_container.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_container.so.1.65.1
    libboost_container.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_container.so
    libboost_chrono.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.65.1
    libboost_chrono.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_chrono.so
    libboost_atomic.so.1.65.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.65.1
    libboost_atomic.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libboost_atomic.so

I also tried to

but I still get the error. I'm not sure how to figure out what the reason is. What can I do ?

skleff1994 commented 4 years ago

So I finally spotted my mistake: I had accidentally deleted boost headers while trying out a source installation, and they wouldn't come back through a standard installation, so I had to remove the boost dependencies first and then reinstall it, as mentioned in this post . This obviously solved the problem ! I'll close this issue now