macmanes-lab / BinPacker

from https://sourceforge.net/projects/transcriptomeassembly/files/
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Not able to install in Linux make error ? #3

Open sunnyEV opened 4 years ago

sunnyEV commented 4 years ago

I Installed boostlib and exported LIB path in .bashrc and configured BInPacker with boost lib it went well. make pops up an error. How do I rectify this? ./configure --with-boost=/home/softwares/boost_1_72_0 make Error

make[2]: Leaving directory '/home/softwares/BinPacker-master/plugins/fastool' Making all in ./plugins/rsem/ make[2]: Entering directory '/home/softwares/BinPacker-master/plugins/rsem' g++ -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts extractRef.cpp: In function ‘int main(int, char)’: extractRef.cpp:273:25: error: cannot convert ‘std::basic_istream’ to ‘void’ in assignment pt = getline(fin, line); ^ extractRef.cpp:279:36: error: cannot convert ‘std::basic_istream’ to ‘void’ in assignment while((pt = getline(fin, line)) && line[0] != '>') { ^ makefile:16: recipe for target 'rsem-extract-reference-transcripts' failed make[2]: ** [rsem-extract-reference-transcripts] Error 1 make[2]: Leaving directory '/home/softwares/BinPacker-master/plugins/rsem' Makefile:315: recipe for target 'all-recursive' failed make[1]: [all-recursive] Error 1 make[1]: Leaving directory '/home/softwares/BinPacker-master' Makefile:244: recipe for target 'all' failed make: *** [all] Error 2

sunnyEV commented 4 years ago

Suggestions please!

macmanes commented 4 years ago

I'd have a look over at the main repo: https://sourceforge.net/projects/transcriptomeassembly.. FWIW, I've abandoned BinPacker as I could never get it to install after a while.. Please see https://oyster-river-protocol.readthedocs.io/en/latest/ for a better alternative.